Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03010 843 / 0 Phototropic-responsive NPH3 family protein (.1) AT2G47860 740 / 0 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT5G48800 488 / 5e-166 Phototropic-responsive NPH3 family protein (.1) AT3G08570 439 / 1e-146 Phototropic-responsive NPH3 family protein (.1) AT5G67385 427 / 2e-142 Phototropic-responsive NPH3 family protein (.1) AT3G08660 417 / 1e-138 Phototropic-responsive NPH3 family protein (.1) AT1G30440 362 / 3e-116 Phototropic-responsive NPH3 family protein (.1) AT2G30520 356 / 9e-115 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT5G03250 330 / 4e-105 Phototropic-responsive NPH3 family protein (.1) AT5G13600 322 / 5e-102 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G209700 [exp] 1112 / 0 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 532 / 0 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 494 / 2e-168 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G053200 [exp] 454 / 9e-153 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 378 / 6e-123 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 357 / 1e-114 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 357 / 4e-114 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.007G112600 [exp] 350 / 2e-111 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.016G090400 [exp] 345 / 2e-110 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005943 [exp] 891 / 0 AT1G03010 881 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10029443 [exp] 541 / 0 AT1G03010 496 / 4e-172 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 518 / 1e-177 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10011082 [exp] 389 / 1e-127 AT5G67385 476 / 2e-162 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 374 / 3e-121 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 364 / 2e-117 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 341 / 3e-108 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 340 / 3e-108 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 338 / 3e-107 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 337 / 1e-106 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.014G133500.7 pacid=42764716 polypeptide=Potri.014G133500.7.p locus=Potri.014G133500 ID=Potri.014G133500.7.v4.1 annot-version=v4.1 ATGGGTGTGGTTACAGTAGGTGAACTGAAGCCAAGTATATCAGGGAAGAGAGCATTTCGTCCAAGCTCAAGTATAAGGCATGCTACTGAATGTCCCGCTT CAATCATTCTACCGTCTTGCAGGCCAATTTCGGATGTTTCTAGTGATCTTACAGTCGAAGTAGGAGCTGCAAACTTTGCACTTCACAAGTTTCCTCTGGT TTCTCGAAGTGGAAGAATCCGTAAACTGTTGCTAGAAGCGAAAGACTCAAAGATCTCGCGCATAAATATCCCTGCTGTACCTGGTGGACCAGAGGCCTTC GAGCTTGCTGCAAAGTTCTGCTATGGAGTGAATGTTGAGATTACACAATCAAATGTTGCTATGTTATGTTGTGCTGCCCATTTTCTGGAAATGACAGAAG ATTTCGCAGAGAAGAACTTGGAAGCCCGAGCTGAAGCATATCTGAAGGAGATGGTGCTTCCAAACATATCAAGTTCAATTTCGGTTATTCACCGTTGTGA AACTCTATTGCCCATTTCGGAAGAGATCAACCTGGTCAGTAGACTTATCAATGCAATTGCAAGCAATGCATGCAAAGAGCAGCTGACCTCTGGCTTGTTA AAGCTTGATCACAACTTCCCTGCAAAAAGTATGCCACATATGGAACCAGAAACACCATCAGACTGGTGGGGAAAATCACTAGCAGTGCTGAGTCTTGATT TCTTCCAAAGAGTATTATCCGCAGTAAAATCAAAGGGTCTAAAACAGGATATGATTAGCAAAATTTTGATAAACTACGCCCATAATTCTCTTCAAGGCCT TGTTGGCAGGGACCCTCAATTGGTTAAGGGAAGTCTCTTGGATTTGGAGTTGCAGAAGAAACAAAGAGTCATTGTTGAAGCAATAGTTAGCTTACTACCA ACCCAATCAAGAAAGTGTCCAGTTCCAATGGCTTTTCTTTCAAGTTTATTAAAAACTGCTATAGCGTCATCAGCAACTACTTCTTGCAGATCTGATTTGG AGAGGAGGATTGGTCTTCAACTAGATCAGGCAATTCTTGAGGACATCCTAATACCAGCAAATTCACATGGAAACAACCACTGCACCATGTACGATACTGA TTCGATCTTGAGGATCTTCTCTATCTTTCTAAACTTGGATGATGAGGATGATGATGAAGACAACAACTTACGGGATGAAAGTGAGATGGTTTATGATTTT GACAGCCCTGGTTCTCCTAAACAGAGCTCAATTCTAAAGGTATCAAAGCTACTGGATAATTTTCTTGCAGAAGTTGCTCTAGACTCGAACTTGCTGCCAT CAAAGTTTATAGCATTAGCGGAACTACTTCCAGACCATGCTCGTATTGTTGGTGATGGATTGTACAGAGCTGTGGATATCTTCCTCAAGGTTCATCCAAA CATTAAAGATTCTGAACGCTACAGACTCTGCAAGACCATCGATTGCCAGAAATTATCTCAAGAAGCCTGCAGCCATGCTGCACAAAATGAGAGGTTACCT GTACAGATGGCAGTCCAAGTGCTATACTTTGAACAGATCAGGCTCCGAAATGCAATGAACGGGGGACACAACCAGTTATTCTTTGGTGCATTAAATGGTC AATTCCCTCAACGTTCAGGCAGTGGTGCAGGAAGTGGAGCCATCTCTCCAAGAGATAATTATGCATCGGTTAGAAGAGAGAACCGAGAGCTGAAGCTTGA AGTAGCAAGAATGAGAATGAGGCTGACTGATCTCGAGAAGGACCATGTGTCCATGAAACAGGAGCTGGTAAGGACTCACCCTGCAAACAAGTTGTTCAAA TCATTCACCAAAAAATTAAGCAAGCTTAACACCCTATTTCGAATCAATGGTCTTAAGCCCCTAGGGGGCAAGGCTAATTCAGAAACAAGGTTCTTATTCC AGAAGAGAAGGCGTCACTCGGTTTCATGA
AA sequence Show only first row Show all	>Potri.014G133500.7 pacid=42764716 polypeptide=Potri.014G133500.7.p locus=Potri.014G133500 ID=Potri.014G133500.7.v4.1 annot-version=v4.1 MGVVTVGELKPSISGKRAFRPSSSIRHATECPASIILPSCRPISDVSSDLTVEVGAANFALHKFPLVSRSGRIRKLLLEAKDSKISRINIPAVPGGPEAF ELAAKFCYGVNVEITQSNVAMLCCAAHFLEMTEDFAEKNLEARAEAYLKEMVLPNISSSISVIHRCETLLPISEEINLVSRLINAIASNACKEQLTSGLL KLDHNFPAKSMPHMEPETPSDWWGKSLAVLSLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVGRDPQLVKGSLLDLELQKKQRVIVEAIVSLLP TQSRKCPVPMAFLSSLLKTAIASSATTSCRSDLERRIGLQLDQAILEDILIPANSHGNNHCTMYDTDSILRIFSIFLNLDDEDDDEDNNLRDESEMVYDF DSPGSPKQSSILKVSKLLDNFLAEVALDSNLLPSKFIALAELLPDHARIVGDGLYRAVDIFLKVHPNIKDSERYRLCKTIDCQKLSQEACSHAAQNERLP VQMAVQVLYFEQIRLRNAMNGGHNQLFFGALNGQFPQRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVRTHPANKLFK SFTKKLSKLNTLFRINGLKPLGGKANSETRFLFQKRRRHSVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.014G133500 [exp]	0	1
					Potri.006G071700 [exp]	1.41	0.8353
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.005G247100 [exp]	2.00	0.8052
AT1G54610			Protein kinase superfamily pro...		Potri.002G065100 [exp]	2.00	0.8508
AT3G11090	AS2	LBD21	LOB domain-containing protein ...		Potri.010G186000 [exp]	4.89	0.7569
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.008G155400 [exp]	5.83	0.7618	RHEL901,SDE3.1
AT1G75060			unknown protein		Potri.014G041200 [exp]	6.00	0.8259
AT3G13175			unknown protein		Potri.001G366900 [exp]	7.34	0.7921
AT5G09800			ARM repeat superfamily protein...		Potri.005G057500 [exp]	7.41	0.7777
AT2G33840			Tyrosyl-tRNA synthetase, class...		Potri.008G010201 [exp]	7.74	0.7660
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Potri.018G053900 [exp]	10.95	0.7466

Compare expression of checked genes

Potri.014G133500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.