Plant FIBer expression Database

Potri.014G133600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G62920 97 / 2e-28 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005942
[exp]
106 / 6e-32 AT3G62920 94 / 5e-27 unknown protein
Lus10029442
[exp]
98 / 2e-27 AT1G03010 155 / 1e-44 Phototropic-responsive NPH3 family protein (.1)
PFAM info
Representative CDS sequence
>Potri.014G133600.2 pacid=42762482 polypeptide=Potri.014G133600.2.p locus=Potri.014G133600 ID=Potri.014G133600.2.v4.1 annot-version=v4.1
ATGCGCATATCTCTTTCTGGAATGCGAAGTGCTTTCCCCTTTTCAAGACTCGTAAGGCAGCTTGAACAAGAGATGGAAACGGTGGTTAAGGTACTGCAGC
CTGGACCTTTGGGAATAGTGGAGCACAATTTCTCTGCTATGGAGATGCGTCAGGCAAATGCCATTGTCCGCACTGCAGTAGACAATTGGCGGAGGAATGC
AAATCTAGAGAAGAGAAGCAGCGTGTTAAGAGATTTTATTCAGAAATAA
AA sequence
>Potri.014G133600.2 pacid=42762482 polypeptide=Potri.014G133600.2.p locus=Potri.014G133600 ID=Potri.014G133600.2.v4.1 annot-version=v4.1
MRISLSGMRSAFPFSRLVRQLEQEMETVVKVLQPGPLGIVEHNFSAMEMRQANAIVRTAVDNWRRNANLEKRSSVLRDFIQK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G62920 unknown protein Potri.014G133600
[exp]
0 1
AT1G27435 unknown protein Potri.001G325000
[exp]
3.31 0.7985
AT1G22270 Trm112p-like protein (.1) Potri.005G165000
[exp]
4.24 0.7945
AT1G03150 Acyl-CoA N-acyltransferases (N... Potri.005G210400
[exp]
4.47 0.7588 SGB903
AT5G14105 unknown protein Potri.017G066388
[exp]
4.89 0.7723
AT3G05530 ATS6A.2, RPT5A regulatory particle triple-A A... Potri.005G025100
[exp]
5.91 0.7737 Pt-RPT5.1
AT4G39235 unknown protein Potri.004G155500
[exp]
8.12 0.7830
AT4G09550 ATGIP1 ARABIDOPSIS ATGCP3 INTERACTING... Potri.016G034200
[exp]
10.24 0.7538
AT4G29830 VIP3 vernalization independence 3, ... Potri.006G145800
[exp]
10.77 0.7752
AT3G12587 Oligosaccaryltransferase (.1) Potri.008G053300
[exp]
15.19 0.7584
Potri.004G062700
[exp]
15.49 0.7362

Potri.014G133600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.