Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62940 338 / 5e-116 Cysteine proteinases superfamily protein (.1.2.3) AT5G67170 69 / 7e-13 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) AT2G27350 56 / 2e-08 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) AT5G04250 44 / 6e-05 Cysteine proteinases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G196800 [exp] 63 / 8e-11 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.009G160100 [exp] 59 / 2e-09 AT2G27350 440 / 3e-150 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.005G140500 [exp] 55 / 3e-08 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005939 [exp] 390 / 2e-136 AT3G62940 363 / 9e-126 Cysteine proteinases superfamily protein (.1.2.3) Lus10040897 [exp] 374 / 2e-130 AT3G62940 359 / 1e-124 Cysteine proteinases superfamily protein (.1.2.3) Lus10005193 [exp] 60 / 1e-09 AT2G27350 549 / 0.0 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10006255 [exp] 55 / 3e-08 AT5G67170 363 / 7e-124 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Lus10013303 [exp] 52 / 4e-07 AT2G27350 468 / 7e-162 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02338 [poplar] [flax] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Potri.014G134100.1 pacid=42764433 polypeptide=Potri.014G134100.1.p locus=Potri.014G134100 ID=Potri.014G134100.1.v4.1 annot-version=v4.1 ATGTCGGATGCTCAAGAAATACAGGATCAACCAACTGAGGCAATTCCGGCCAATGTGTCTCAAAAGGAAGAGGAATCCCGTGATGAAATGCTTTCTCGGC ACAGAAAGGAGATAAGACAGCTGCAGAACAAAGAAATTGAAATGAAAAAGGCAGCTGCAAAAGGTAGCAAGGCGGAACAGAAAGCTAAGAAAAAGTTGGT CGAGGAAGAGGTCTCTCAACTATCTGCAAAGCTAAAAGAAAAACATGCTGAAGAACTTGCTTCTTTAGGTTACAACAGTACTAATGGAAATGAGAGTAGC AATCTTGACAACTTGGTGAAGGCTGTAGCGGGGGTTTCTGTTACCAACCAGCCTGAGCATTCAAAGCCCAGCAAGAGCGCAAAGAGACGGGGGAAAAGAG CTCAGCAAGAAGCAGAAAGAGAACAAAGAATACAAGAAGAGCAGAGCAACCTTGAAAGTGATCGAATGATTGAAGATGAAAAATTGGAAAGAAAGCTTGA ACCCCTCGGGTTGACTATAAATGAAATAAAGCCAGATGGGCACTGCCTCTACCGAGCTGTTGAAGATCAGCTGGCACTCCTTTCTGGAGGTTCAGCACCA TATGATTACCAAGAGCTTCGAAAATTGGTGGCTGCCTATATGAGGGAAAACTCACCAGATTTCCTCCCTTTTTTCCTGTCAGATACTATTACCGAAGAAC ACTCTGATCATTCACTCTCAGATAGATTCGAGAATTACTGTAAAGAAGTTGAGTCTACAACAGCATGGGGAGGGCAGCTGGAGCTTGGGGCTCTAACTCA CTGCCTCCGGAGGCATATCAAGATATTTTCAGGATCATTCCCTGATGTGGAGATGGGAAAGGAGTACAAATCTGACGGTGGTGCTGGTTCATCAAATGCA AGCATTATGTTGTCGTACCATAAGCATGCGTTTGGTCTTGGGGAGCACTATAATTCTGTTGTTCCAAATTTGATCCAATAG
AA sequence Show only first row Show all	>Potri.014G134100.1 pacid=42764433 polypeptide=Potri.014G134100.1.p locus=Potri.014G134100 ID=Potri.014G134100.1.v4.1 annot-version=v4.1 MSDAQEIQDQPTEAIPANVSQKEEESRDEMLSRHRKEIRQLQNKEIEMKKAAAKGSKAEQKAKKKLVEEEVSQLSAKLKEKHAEELASLGYNSTNGNESS NLDNLVKAVAGVSVTNQPEHSKPSKSAKRRGKRAQQEAEREQRIQEEQSNLESDRMIEDEKLERKLEPLGLTINEIKPDGHCLYRAVEDQLALLSGGSAP YDYQELRKLVAAYMRENSPDFLPFFLSDTITEEHSDHSLSDRFENYCKEVESTTAWGGQLELGALTHCLRRHIKIFSGSFPDVEMGKEYKSDGGAGSSNA SIMLSYHKHAFGLGEHYNSVVPNLIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62940			Cysteine proteinases superfami...		Potri.014G134100 [exp]	0	1
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G067200 [exp]	4.00	0.7913	PRMT901
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Potri.005G152200 [exp]	6.63	0.7745
AT3G25910			Protein of unknown function (D...		Potri.006G154300 [exp]	8.94	0.7524
AT2G40430			unknown protein		Potri.008G075700 [exp]	9.21	0.7070
AT5G22100			RNA cyclase family protein (.1...		Potri.001G216400 [exp]	9.79	0.7681
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Potri.006G132600 [exp]	24.73	0.7341	Pt-RHL2.1
AT1G53900			Eukaryotic translation initiat...		Potri.001G163300 [exp]	26.98	0.7167
AT2G19540			Transducin family protein / WD...		Potri.007G094000 [exp]	29.22	0.7103
AT2G47420		DIM1A	adenosine dimethyl transferase...		Potri.014G121200 [exp]	30.85	0.7240
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.005G135500 [exp]	32.78	0.6897

Compare expression of checked genes

Potri.014G134100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.