Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-DEGP2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47940 932 / 0 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) AT5G40200 517 / 8e-178 DEGP9 DegP protease 9 (.1) AT5G36950 391 / 5e-129 DEGP10 DegP protease 10 (.1) AT1G65630 355 / 2e-115 DEGP3 DegP protease 3 (.1) AT1G65640 301 / 7e-96 DEGP4 DegP protease 4 (.1) AT3G16540 286 / 5e-89 DEGP11 DegP protease 11 (.1) AT5G40560 276 / 1e-86 DEGP13 DegP protease 13 (.1) AT3G16550 266 / 9e-82 DEGP12 DEGP protease 12 (.1) AT1G51150 130 / 3e-34 DEGP6 DegP protease 6 (.1) AT5G54745 108 / 9e-27 Trypsin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G207200 [exp] 1097 / 0 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.012G077900 [exp] 538 / 0 AT5G40200 845 / 0.0 DegP protease 9 (.1) Potri.015G073100 [exp] 531 / 0 AT5G40200 842 / 0.0 DegP protease 9 (.1) Potri.008G079900 [exp] 407 / 5e-135 AT5G36950 857 / 0.0 DegP protease 10 (.1) Potri.001G348800 [exp] 84 / 5e-17 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.013G018300 [exp] 78 / 6e-15 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.004G129200 [exp] 62 / 5e-10 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.011G083300 [exp] 45 / 0.0001 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Potri.007G067850 [exp] 42 / 0.0002 AT5G40200 45 / 5e-06 DegP protease 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032163 [exp] 510 / 3e-175 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10014524 [exp] 508 / 2e-174 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10005931 [exp] 448 / 8e-153 AT2G47940 452 / 8e-155 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10024525 [exp] 390 / 8e-129 AT5G36950 764 / 0.0 DegP protease 10 (.1) Lus10008726 [exp] 257 / 7e-80 AT5G36950 443 / 7e-153 DegP protease 10 (.1) Lus10040905 [exp] 118 / 4e-31 AT2G47940 110 / 5e-29 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10008727 [exp] 118 / 8e-30 AT5G36950 286 / 5e-94 DegP protease 10 (.1) Lus10008781 [exp] 83 / 2e-16 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10037815 [exp] 70 / 3e-12 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10022234 [exp] 65 / 1e-10 AT3G27925 623 / 0.0 DegP protease 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [poplar] [flax] Peptidase_PA PF13365 [poplar] [flax] Trypsin_2 Trypsin-like peptidase domain
Representative CDS sequence Show only first row Show all	>Potri.014G135200.3 pacid=42764633 polypeptide=Potri.014G135200.3.p locus=Potri.014G135200 ID=Potri.014G135200.3.v4.1 annot-version=v4.1 ATGGCCATGGCAGTCGCCAACTGCTGCTTCTCTGTTGTTACCTCCACCGTTAAATTCCGTTGCTGTGTTCCTTCCCAACCATATCTCGCCACGTCGCAAC ATTCCGTTGCTTCCGTCAATTGTAAAGCCGTCGTCAATCGCAGCAGACGCCCTGGAGAACATAAAGAAGGTGTATCGCAGAAGAAGTCTCCGGGGAAATC GAAGGACAAGAGGTCCTCTTTACATGATGAGGATGATGATGGAATCAGTGGTAAAAGGAATGCAGGGAAATCCCAATCAATGGCTTTTAAGTCATTTGGG GCTCAAAGAAAAGATAAGAAAGAATTTAAGTTTGATATGAAGGAACAACAGTTTGAGCCACAGAATCTTAAAGATGCAGCATTTTTAGATGCAGTTGTCA AGGTTTACTGCACCCATACAGAGCCTGATTATTCCCTTCCTTGGCAAAAACAAAGGCAATACACAAGCACAGGAAGTGCTTTTATGATTGGCAATGGAAA ACTTTTGACAAATGCTCATTGTGTTGAATACTATACACAGGTCAAAGTGAAGAGAAGGGGAGATGATACCAAATACGTAGCTAAGGTACTGGCCAGAGGA GTTGATTGCGACATTGCTTTGCTTTCAGTAGAAAGTGAGGAATTTTGGGAAGGAGCAGAACCACTCAAGTTTGGACACTTACCACGTCTTCAGGACGCAG TAACAGTTGTAGGATATCCCCTTGGAGGAGACACCATTTCAGTGACAAAGGGGGTTGTGTCTCGTATCGAGGTTACATCGTATGCTCATGGATCATCTGA TTTGTTGGGTATTCAAATTGACGCAGCAATAAATCCTGGTAACAGCGGTGGTCCTGCATTCAATGACCAGGGGGAGTGCATTGGAGTAGCATTTCAGGTA TACAGGTCTGAAGAGGTTGAGAATATTGGATATGTGATTCCAACAACAGTAGTATCTCATTTTCTAAAGGACTTTGAGAGGAATGAGAAATACACTGGCT TTCCTTCACTTGGTGTGATGCTGCAAAAGTTGGAGAATCCGGCATTACGTGCATGCTTAAAAGTACAGTCTAATGAGGGTGTGTTGGTACGGAGAGTTGA ACCAACCGCTGATGCAAATAGAGTCTTAAAGGAGGGGGACGTGATTGTGAGCTTTGACGATGTTCATGTGGGGTGTGAAGGAACAGTGCCATTTCGATCA AATGAGCGCATTGCATTCCGTTATCTTATTAGTCAAAAATTCGCAGGCGATGAAGCAGAGCTTGGCATAATTAGAGCTGGGTCATTCATGAAAGTTCAAG TAGTTCTTAATCCTAGAGTGCATTTGGTTCCATATCATGTTGATGGGGGTCAGCCTTCGTATTTAATAATTGCTGGTTTGGTGTTTACTCCCCTTTCAGA ACCACTGATAGAGGAGGAATGCGAGGGCTCTATAGGGCTGAAACTACTAGCCAAGTCACGTTATTCTCTGGCAAGGTTCAAAGGGGAGCAGATTGTTATC CTATCACAGGTCTTAGCAAATGAAGTCAACTTTGGATACGAGGATATGAGCAATCAGCAGGTTTTGAAGTTCAATGGAACTCAAATAAAAAACATTCATC ACCTAGCACACCTTGTCGATTCATGCAAGAACAGATATTTAGTTTTTGAGTTTGAAGACAATTACCTTGTTGTGCTGGAGAGGGAAGCAGCGAGTGCTTG TTCATCCCACATTCTCAAAGATTATGGAATTCCATCTGAACGATCTTCTGATCTATCAGAGCCATATGTGGATTCATTAGAAGACAACCAGGCAGTAGAT CAGGATTTTGGCAACAGCACGGTTACAAATCTGGAAGTTGGCTTTGATGGACTCCTCTGGACATAA
AA sequence Show only first row Show all	>Potri.014G135200.3 pacid=42764633 polypeptide=Potri.014G135200.3.p locus=Potri.014G135200 ID=Potri.014G135200.3.v4.1 annot-version=v4.1 MAMAVANCCFSVVTSTVKFRCCVPSQPYLATSQHSVASVNCKAVVNRSRRPGEHKEGVSQKKSPGKSKDKRSSLHDEDDDGISGKRNAGKSQSMAFKSFG AQRKDKKEFKFDMKEQQFEPQNLKDAAFLDAVVKVYCTHTEPDYSLPWQKQRQYTSTGSAFMIGNGKLLTNAHCVEYYTQVKVKRRGDDTKYVAKVLARG VDCDIALLSVESEEFWEGAEPLKFGHLPRLQDAVTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSSDLLGIQIDAAINPGNSGGPAFNDQGECIGVAFQV YRSEEVENIGYVIPTTVVSHFLKDFERNEKYTGFPSLGVMLQKLENPALRACLKVQSNEGVLVRRVEPTADANRVLKEGDVIVSFDDVHVGCEGTVPFRS NERIAFRYLISQKFAGDEAELGIIRAGSFMKVQVVLNPRVHLVPYHVDGGQPSYLIIAGLVFTPLSEPLIEEECEGSIGLKLLAKSRYSLARFKGEQIVI LSQVLANEVNFGYEDMSNQQVLKFNGTQIKNIHHLAHLVDSCKNRYLVFEFEDNYLVVLEREAASACSSHILKDYGIPSERSSDLSEPYVDSLEDNQAVD QDFGNSTVTNLEVGFDGLLWT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Potri.014G135200 [exp]	0	1	Pt-DEGP2.2
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144700 [exp]	1.41	0.9165
AT4G09730		RH39	RH39 (.1)		Potri.005G198300 [exp]	2.23	0.9260
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Potri.001G421300 [exp]	2.23	0.8940
					Potri.018G138206 [exp]	3.46	0.9105
					Potri.018G145600 [exp]	5.65	0.9014
AT5G59250			Major facilitator superfamily ...		Potri.001G244100 [exp]	6.70	0.8775
AT4G31040			CemA-like proton extrusion pro...		Potri.006G080100 [exp]	9.38	0.8863
AT2G47300			ribonuclease Ps (.2.3)		Potri.002G194100 [exp]	9.48	0.8636
AT4G21770			Pseudouridine synthase family ...		Potri.004G019100 [exp]	10.39	0.8908
AT1G09420		G6PD4	glucose-6-phosphate dehydrogen...		Potri.013G005200 [exp]	13.71	0.8525

Compare expression of checked genes

Potri.014G135200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.