Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03130 284 / 2e-83 BRCT domain-containing DNA repair protein (.1) AT3G21480 276 / 1e-78 BRCT domain-containing DNA repair protein (.1) AT2G41450 66 / 9e-11 N-acetyltransferases;N-acetyltransferases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014700 [exp] 307 / 3e-89 AT3G21480 366 / 4e-109 BRCT domain-containing DNA repair protein (.1) Potri.006G045100 [exp] 71 / 3e-12 AT2G41450 487 / 2e-167 N-acetyltransferases;N-acetyltransferases (.1.2) Potri.002G214050 [exp] 0 / 1 AT4G03130 40 / 3e-05 BRCT domain-containing DNA repair protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033984 [exp] 278 / 3e-79 AT3G21480 301 / 3e-86 BRCT domain-containing DNA repair protein (.1) Lus10038633 [exp] 272 / 5e-77 AT3G21480 317 / 5e-92 BRCT domain-containing DNA repair protein (.1) Lus10037907 [exp] 269 / 4e-76 AT3G21480 323 / 3e-94 BRCT domain-containing DNA repair protein (.1) Lus10012790 [exp] 100 / 3e-22 AT3G21480 112 / 1e-26 BRCT domain-containing DNA repair protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G135520.1 pacid=42764240 polypeptide=Potri.014G135520.1.p locus=Potri.014G135520 ID=Potri.014G135520.1.v4.1 annot-version=v4.1 ATGGAAGCGAACCAAGGCCAGCTTCAACAATTTCAAGATACCGTAACTTTTGATGATGATACAGCTGTTCTCGATAGTCCCTTGGTAGAAACCCAGGTGG AGAAACTTGGTTTTTATACTCAAGTGCTTGGTGATTCTGTTGAGAATGCTAAACATGAACTAGTGAGCCAGGTAATCCCTGACAGTGAGGATGAAGAAAT CCATGGAGACCAATTAGAGAATGCAGCTGATGGGGTATCTGATGTTGAAACTGGTACAAGAATTAAAGGAAATGGAGTAGTAGGCTTACAAATGAGGCAG CCCAGTCCGCGTTTTCAGTGGCTAAAGGATTTCGCAGAAGATTTTGTTTCTGATGGCTCTGCTGGTGAAGATAAAGGTGCAGGGGCTTTAATTAATGCTG AAGACACCGATGAGAAAACTGATTGTCCTCGATTGCATACATGTGATCAAGAGTTTGCAAGGTTAAATTATGTTGACTCTGAGGAACCTGGAGAGTCATC TCAAGCTAGTGCACTTGGCTATGTGGATCACTTCCTATCAGATAATGATGTGAACTTTTCTCCTAGAACTGAGCTCAGAAACACTGTCAGGAAGAAATCC CCTCCTGTTCTGAGTGCAAAAGGCTGTCGAAATTTGGCCAAAAGTATCAAAACCAGAACCCCAATTTGTAAACATAAGACCTTTGGAGGGGTTGATTTCT TTAGCAAGAGGATGGATGAGTCTTTTGATTGTGGAGGCTGCCAGCAGAGATATGTGCCAAGGCATCAGAAGGCAGGGTATATTGATGGTAAAGGAGGTTG CAGATCAGATAATGACAGTGAAGAGAATTATGAAGATCTTCATAAGAAAGTAACAAGTTCACCCCACACAGATTCAAGGGTTGCAGGCCACAGTGTGAAA GAGACATACAGAACAGGACAAGAATATGAATTTATATCTGAAAATACTTCTGACAATAAGCCAATGGAACAGTTTTTTGACCTTGCATCAGGGCACGAGT TGGAAATTTGCAGTGATGAAAGAAATACATCAGACACGTTGGATATTGGTTGTAACACCCAAATAGCTGCTGAAGCCATGGAAGCTTTATTTTACGGCCC CCCAGCTGATAGCAGTGCTGGTGAGGCTTTTCAAGATCCTAACGACCCTCTTGTAGATTCTTCAAAAGATGTAACAAATAGTAAAGTTCATTTAAAGGAA CTTTCCTATGAAAAAGGTGTTCTCTGCAGTCTAGAGGACATCACAAGAGTGCCAAAGCAAAGAAAGGTTTATGCTAGAAAGGGAGCTTCTGTTTCATCTT GGAAACAGCCTAGTCATCAGGAGTTGCATCGTGACTTGTCAGAAACAACAAAAAGGAAAAGAAGCAAACCCTTGGTTGGGGAGTTAACTGGTAGGAGTTT TATCTATGCAACCAAAAGTTCAGCCACAACATCTCGTAAGACTATTGACCAAAGAAAGGATGAGGAACCTGCGAGGAGAAACAAAATTAAGGAATGTGAC AACTATGGGAGTTTGTCAGCGTCAGTTGAAAGCATTTCACCTGGCAAACAACAGATACTACAGGATCCTTTTGCCTCCCAAGACTCGCATCCAACGTTAG GAGCCAAATTCAAAAGGACTAATGGTGGGTCAGCTAATCCAGGGGTAAGGACAGATGATTTCATGGAGGGTAGTATAATTACATACAAAAGAAAGAGGAG TCATTTGGTTGCGAAACCATCCAAAATTTCGACCACTACAGGAAGATGTCCCAAATTTTGTTTCAACACATCTGAAGGAGGAAGAATCAATGGACTGAGC CAAGAAAAGCTTGCTAGCATGGAGGTATCTACCTCAAACAGTTCGCTAAAGCTGAATGCGTGGAGCTATCCCAAAGGTAAAAGAACACGACGTGGACTGC CAAGTCATTTAAATATAGCTACTAGCCAATATACCCCATTCACCATAGCTGATGGCAAAGACCACCCCCGAAAACCACTCAACATAAACCTTCCCAGATC ATCCCCGATGAAAAAGCTTATTAGATTAGGCAATCCCAAGTCATTACCTGGTTCCAGATGGAAGGATCTGAGGAAACGACGAGATACGGCATATTTAGGA GTTCTGTTTAGCCAGCATTTAGGTGATGATATCATCAGGCAGCAGAAAAAGATCTTGGCAAGGCTTGGCATTTCCGTGGCATCATCTTTAGCGGATGCTA CACACTTTGTAGTGGATAGATTTGTGCGTACAAGGAACATGTTGGAAGCTATTGCTCTTGGTAAACCAGTGGTGACTCATTTATGGCTTGAGAGCTGCGG GCAAGCAAGCCTCCTTATTGATGAGAAAAACTTTATCTTAAGAGATGCGAAGAAGGAAAAGGATATTGGTTTTAGCCTGCCTGTTTCACTGGCTCGTGCA AACCAACAACCACTTCTAAAGGGTCAAAGAGTCTTCATTACACCAAATATAAAACCTGAAAAAGAAATGATAACTAGCTTGGTCAATGCTCTTCATGGCC AGATCATGGAGAAAAGTCAGATATTTGCTTTGAAAATTCCAGATGATCTATTGATTCTTTCATGTGAAGAAGATCATGCAATTTGTGTGCCACTTCTTGA TAAAGGAGCAGCAGTTTACAGCTCAGAGCTTCTATTGAATGGGATTGTTATCCAGAAATTAGAATATGAGAGGCATCGACTCTTTGTGAATGAAGCTAAG GGAAATCGAGTGAGCAAGAGGTGA
AA sequence Show only first row Show all	>Potri.014G135520.1 pacid=42764240 polypeptide=Potri.014G135520.1.p locus=Potri.014G135520 ID=Potri.014G135520.1.v4.1 annot-version=v4.1 MEANQGQLQQFQDTVTFDDDTAVLDSPLVETQVEKLGFYTQVLGDSVENAKHELVSQVIPDSEDEEIHGDQLENAADGVSDVETGTRIKGNGVVGLQMRQ PSPRFQWLKDFAEDFVSDGSAGEDKGAGALINAEDTDEKTDCPRLHTCDQEFARLNYVDSEEPGESSQASALGYVDHFLSDNDVNFSPRTELRNTVRKKS PPVLSAKGCRNLAKSIKTRTPICKHKTFGGVDFFSKRMDESFDCGGCQQRYVPRHQKAGYIDGKGGCRSDNDSEENYEDLHKKVTSSPHTDSRVAGHSVK ETYRTGQEYEFISENTSDNKPMEQFFDLASGHELEICSDERNTSDTLDIGCNTQIAAEAMEALFYGPPADSSAGEAFQDPNDPLVDSSKDVTNSKVHLKE LSYEKGVLCSLEDITRVPKQRKVYARKGASVSSWKQPSHQELHRDLSETTKRKRSKPLVGELTGRSFIYATKSSATTSRKTIDQRKDEEPARRNKIKECD NYGSLSASVESISPGKQQILQDPFASQDSHPTLGAKFKRTNGGSANPGVRTDDFMEGSIITYKRKRSHLVAKPSKISTTTGRCPKFCFNTSEGGRINGLS QEKLASMEVSTSNSSLKLNAWSYPKGKRTRRGLPSHLNIATSQYTPFTIADGKDHPRKPLNINLPRSSPMKKLIRLGNPKSLPGSRWKDLRKRRDTAYLG VLFSQHLGDDIIRQQKKILARLGISVASSLADATHFVVDRFVRTRNMLEAIALGKPVVTHLWLESCGQASLLIDEKNFILRDAKKEKDIGFSLPVSLARA NQQPLLKGQRVFITPNIKPEKEMITSLVNALHGQIMEKSQIFALKIPDDLLILSCEEDHAICVPLLDKGAAVYSSELLLNGIVIQKLEYERHRLFVNEAK GNRVSKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03130			BRCT domain-containing DNA rep...		Potri.014G135520 [exp]	0	1
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Potri.013G161200 [exp]	3.16	0.6696
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Potri.015G105500 [exp]	11.18	0.6394
AT4G17150			alpha/beta-Hydrolases superfam...		Potri.006G000700 [exp]	14.59	0.6670
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Potri.014G169400 [exp]	17.94	0.6109
AT1G11440			unknown protein		Potri.004G029500 [exp]	21.16	0.6455
AT3G07650	CO	COL9	CONSTANS-like 9 (.1.2.3.4)		Potri.002G214500 [exp]	22.29	0.6346
AT1G76630			Tetratricopeptide repeat (TPR)...		Potri.002G001700 [exp]	23.49	0.6315
AT5G57110		AT-ACA8, ACA8	"AUTOINHIBITED CA2+ -ATPASE, I...		Potri.018G139900 [exp]	31.43	0.5662
AT3G50810			Uncharacterised protein family...		Potri.009G110200 [exp]	31.98	0.6173
AT5G25080			Sas10/Utp3/C1D family (.1)		Potri.018G018100 [exp]	36.33	0.5846

Compare expression of checked genes

Potri.014G135520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.