Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03115 422 / 2e-149 Mitochondrial substrate carrier family protein (.1) AT3G54110 171 / 5e-51 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT1G14140 159 / 2e-46 Mitochondrial substrate carrier family protein (.1) AT4G24570 158 / 6e-46 DIC2 dicarboxylate carrier 2 (.1) AT5G58970 156 / 2e-45 ATUCP2 uncoupling protein 2 (.1.2) AT5G09470 130 / 2e-35 DIC3 dicarboxylate carrier 3 (.1) AT2G22500 129 / 5e-35 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT5G19760 116 / 2e-30 Mitochondrial substrate carrier family protein (.1) AT5G66380 106 / 1e-26 ATFOLT1 folate transporter 1 (.1) AT3G53940 103 / 6e-25 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G095500 [exp] 172 / 1e-51 AT3G54110 513 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.016G110100 [exp] 166 / 5e-49 AT3G54110 483 / 5e-174 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.017G045100 [exp] 164 / 4e-48 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 163 / 7e-48 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.017G045150 [exp] 162 / 2e-47 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.001G247800 [exp] 161 / 2e-47 AT5G58970 456 / 3e-163 uncoupling protein 2 (.1.2) Potri.007G113000 [exp] 161 / 4e-47 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.010G165900 [exp] 154 / 2e-44 AT1G14140 447 / 1e-159 Mitochondrial substrate carrier family protein (.1) Potri.002G104400 [exp] 145 / 7e-41 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024769 [exp] 452 / 2e-161 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1) Lus10035538 [exp] 169 / 4e-50 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10027755 [exp] 163 / 6e-48 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10021123 [exp] 162 / 9e-48 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10040709 [exp] 159 / 2e-46 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10009777 [exp] 157 / 5e-46 AT4G03115 140 / 4e-40 Mitochondrial substrate carrier family protein (.1) Lus10017187 [exp] 157 / 1e-45 AT3G54110 501 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10030443 [exp] 152 / 5e-44 AT1G14140 421 / 3e-149 Mitochondrial substrate carrier family protein (.1) Lus10016445 [exp] 147 / 2e-41 AT5G58970 493 / 1e-177 uncoupling protein 2 (.1.2) Lus10007883 [exp] 116 / 3e-29 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.014G135530.1 pacid=42764596 polypeptide=Potri.014G135530.1.p locus=Potri.014G135530 ID=Potri.014G135530.1.v4.1 annot-version=v4.1 ATGGATGGCAGCCATCCCCATTCGAGTCCCAGGAATTCAGATTCTTTTGTTGTTAAAGTGGCAGAGGAGAAGCAGAAATGGCCAGTCTCGTCTTCCCAAA TGGTATCTCACTTCGCTACTAGTGGACTCTCCGTTGCTGTTGCCACCGCCATCACGCACCCCTTAGATGTGCTCAAGGTTCGACTACAAATGCAACTTGT TGGCCGGAGAGGCCCCTTGACTGGAATGGGACAAGTGGCTGTTCAAGTATTGAAAAAGGAAGGGCCAAAGGCTTTGTATCTGGGGTTGATGCCTGCATTG ATTAGGTCAGTTCTTTATGGAGGTCTACGTTTAGGCCTCTATGAACCCTCGAAGTATGCCTGTAATTTGGCTTTTGGGTCCACCAATATCTTACTTAAGA TTGCATCAGGAGCATTTTCTGGTGCAGTTGCAACTGCACTTACTAATCCAGTCGAAGTTCTGAAGGTCCGGTTGCAGATGAATTCAAATCAGAGACAAGG AGGACCAATGGCGGAAATGCGTACAATTGTTTCTGAAGAGGGAATAAGAGCTCTTTGGAAGGGGGTTGGCCCTGCTATGGTGAGAGCTGCTGCTTTGACT GCATCACAACTGGCAACATATGATGAAACGAAGCAGGTTCTGATTAGGTGGACACCTCTGGATGAAGGATTTCATCTACATCTACTCTCGAGTACAGTTG CTGGAACAGTGAGTACCCTTGTAACTGCACCTATGGACATGATTAAAACCCGCCTCATGCTGCAACGAGAATCTAAAACAGTTGGAAACTATAAAAATGG ATTTCATTGTGCATATCAGGTTATGCTTAAAGAAGGCCCTAGGGCACTTTACAAGGGGGGCTTTGCAATATTTGCAAGATTGGGTCCGCAAACTACAATT ACATTTATACTATGTGAGGAGCTGCGCAAGCTTGCCGGATTGGATGCCATCTAG
AA sequence Show only first row Show all	>Potri.014G135530.1 pacid=42764596 polypeptide=Potri.014G135530.1.p locus=Potri.014G135530 ID=Potri.014G135530.1.v4.1 annot-version=v4.1 MDGSHPHSSPRNSDSFVVKVAEEKQKWPVSSSQMVSHFATSGLSVAVATAITHPLDVLKVRLQMQLVGRRGPLTGMGQVAVQVLKKEGPKALYLGLMPAL IRSVLYGGLRLGLYEPSKYACNLAFGSTNILLKIASGAFSGAVATALTNPVEVLKVRLQMNSNQRQGGPMAEMRTIVSEEGIRALWKGVGPAMVRAAALT ASQLATYDETKQVLIRWTPLDEGFHLHLLSSTVAGTVSTLVTAPMDMIKTRLMLQRESKTVGNYKNGFHCAYQVMLKEGPRALYKGGFAIFARLGPQTTI TFILCEELRKLAGLDAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03115			Mitochondrial substrate carrie...		Potri.014G135530 [exp]	0	1
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.018G131300 [exp]	2.44	0.8205
AT1G05350			NAD(P)-binding Rossmann-fold s...		Potri.012G097700 [exp]	10.39	0.8260
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.002G019400 [exp]	10.58	0.8305
AT1G45150			unknown protein		Potri.014G180700 [exp]	13.41	0.8207
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.015G026100 [exp]	16.24	0.8149
AT5G05310			TLC ATP/ADP transporter (.1.2....		Potri.019G048700 [exp]	26.51	0.7745
AT4G23895			Pleckstrin homology (PH) domai...		Potri.001G091100 [exp]	27.22	0.7732
					Potri.010G031250 [exp]	29.94	0.7869
AT3G28430			unknown protein		Potri.018G140800 [exp]	32.98	0.7977
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.010G049100 [exp]	34.64	0.8102

Compare expression of checked genes

Potri.014G135530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.