Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03110 513 / 0 AtRBP-DR1 RNA-binding protein-defense related 1 (.1.2) AT1G03457 477 / 2e-167 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G16280 172 / 8e-48 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT2G47310 106 / 1e-24 flowering time control protein-related / FCA gamma-related (.1) AT3G07810 69 / 2e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 66 / 1e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 66 / 2e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G00830 66 / 2e-11 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G26650 65 / 4e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G71770 65 / 6e-11 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G214000 [exp] 645 / 0 AT4G03110 506 / 4e-179 RNA-binding protein-defense related 1 (.1.2) Potri.010G147900 [exp] 169 / 1e-45 AT4G16280 338 / 3e-107 RNA binding;abscisic acid binding (.1.2.3.4) Potri.002G192900 [exp] 137 / 2e-35 AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1) Potri.014G161600 [exp] 69 / 3e-12 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 67 / 8e-12 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G172100 [exp] 66 / 9e-12 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G344900 [exp] 66 / 1e-11 AT5G40490 286 / 1e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G370300 [exp] 65 / 3e-11 AT3G13224 317 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.017G059000 [exp] 61 / 3e-11 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005926 [exp] 608 / 0 AT4G03110 548 / 0.0 RNA-binding protein-defense related 1 (.1.2) Lus10040910 [exp] 375 / 4e-128 AT4G03110 326 / 5e-109 RNA-binding protein-defense related 1 (.1.2) Lus10029574 [exp] 173 / 4e-47 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4) Lus10037787 [exp] 146 / 5e-38 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4) Lus10017070 [exp] 142 / 2e-36 AT4G16280 376 / 2e-121 RNA binding;abscisic acid binding (.1.2.3.4) Lus10006304 [exp] 108 / 6e-26 AT4G16280 322 / 7e-106 RNA binding;abscisic acid binding (.1.2.3.4) Lus10012348 [exp] 71 / 7e-13 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10010042 [exp] 68 / 6e-12 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10032124 [exp] 67 / 6e-12 AT5G40490 307 / 3e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10006396 [exp] 67 / 7e-12 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.014G135540.1 pacid=42764566 polypeptide=Potri.014G135540.1.p locus=Potri.014G135540 ID=Potri.014G135540.1.v4.1 annot-version=v4.1 ATGGCGGAGGGTAAAAAGGAGAAGAAATCAAGCAGCAGCAGCAGCAGCAGTAATGAAGAGAGCGTGAAGCTATTTGTGGGTCAAGTACCAAAGAACATGA CAGAAGCTGAGCTTCTGGCAATGTTCAAAGACTTCGCTTTGGTAGACGAAGTCAACATCATTAAAGACAAGACAACTCGCGCTTCCAGAGGTTGTTGTTT TCTAATATGTCCTTCCAGACAAGAAGCAGACAAGGCAGTTAATGCTTGTCATAATAAGAAAACATTGCCCGGGGCATCTAGTCCGTTACAAGTGAAGTAT GCAGATGGCGAGTTGGAAAGGCTAGAACACAAACTCTTTGTTGGTATGCTTCCAAAAAATGTTTCTGAAGCTGAAGTATCTGATTTATTCTCTAAATATG GAACTATAAAGGACTTGCAAATACTAAGAGGTTCTCAACAAACAAGCAAAAGCTGTGCTTTTTTGAAGTACGAGACAAAAGAACAAGCCCTTGCTGCCCT GGAGGACATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCTTTGGTTGTCAAATGGGCAGATACAGAAAAGGAAAGGCAGGCTCGGAGGGCTCAG AAAGCACAATCGCAAGCTATGCCTAACACTGATTCACAACATCCGTCTTTATTTGGTGCCTTGCCAATGGGATATGCTCCCCCTTATAATGGATATGGAT ACCAGGCTCCTGGAGTTTATGGACTTATGCCATACCGTCTGCCACCCATGCAGAATCAGCCTGCATTTCATAGCATGGTTCCTCCAGTAAATCAAGGAAA TGTATTGCGTGGTGGAATCAGACCTGACCTTTCACCCAATATTTCCCCTAGAAATTATGCTCCTGCTACTTATATGGGCTCTGCTTATCCTACGGTGACA GGTCTTCAGTATCCAGTGGCATATCCTGGAGCAATGATGACTCACCGGCCTTTGAGTAGTTCACCTGGTGCATTGTCACCCACAGTTGTGAGCAGTAATT CTGCAACACCTTCAGGTGTCGGTGGAAGTTCCGGGGTTCAAGTGGAAGGTCCACCTGGTGCTAATTTGTTTATATATCACATACCTCAGGAATTCGGTGA TCAAGAACTTGCCAATGCTTTTGAAGCATTTGGTAAGGTCTTAAGTGCCAAGGTTTTTGTTGATAAAGTAACTGGTGTTAGCAAATGCTTTGGATTTGTT AGTTATGACTCACCAGCAGCAGCTCAAAATGCTATTACCATGATGAATGGATTCCAATTAGGGGGTAAGAAATTGAAGGTTCAGCTTAAGAGAGACAATA AACAGAGCAAACCATATTGA
AA sequence Show only first row Show all	>Potri.014G135540.1 pacid=42764566 polypeptide=Potri.014G135540.1.p locus=Potri.014G135540 ID=Potri.014G135540.1.v4.1 annot-version=v4.1 MAEGKKEKKSSSSSSSSNEESVKLFVGQVPKNMTEAELLAMFKDFALVDEVNIIKDKTTRASRGCCFLICPSRQEADKAVNACHNKKTLPGASSPLQVKY ADGELERLEHKLFVGMLPKNVSEAEVSDLFSKYGTIKDLQILRGSQQTSKSCAFLKYETKEQALAALEDINGKHKMEGSSVPLVVKWADTEKERQARRAQ KAQSQAMPNTDSQHPSLFGALPMGYAPPYNGYGYQAPGVYGLMPYRLPPMQNQPAFHSMVPPVNQGNVLRGGIRPDLSPNISPRNYAPATYMGSAYPTVT GLQYPVAYPGAMMTHRPLSSSPGALSPTVVSSNSATPSGVGGSSGVQVEGPPGANLFIYHIPQEFGDQELANAFEAFGKVLSAKVFVDKVTGVSKCFGFV SYDSPAAAQNAITMMNGFQLGGKKLKVQLKRDNKQSKPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Potri.014G135540 [exp]	0	1
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Potri.011G117700 [exp]	12.24	0.6594	CYP72D2-1
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.001G279900 [exp]	13.26	0.6710
AT5G42620			metalloendopeptidases;zinc ion...		Potri.014G040800 [exp]	17.60	0.6488
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Potri.002G045700 [exp]	19.89	0.6100	TSA1.2
AT4G38640			Plasma-membrane choline transp...		Potri.004G173600 [exp]	21.81	0.6579
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Potri.019G077600 [exp]	25.03	0.6205
AT1G57680			unknown protein		Potri.004G227000 [exp]	26.22	0.5706
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.010G101400 [exp]	57.75	0.6425
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Potri.001G343500 [exp]	58.98	0.5972
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.010G233600 [exp]	63.08	0.6195

Compare expression of checked genes

Potri.014G135540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.