Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03100 501 / 3e-176 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT5G22400 405 / 4e-138 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT2G46710 399 / 1e-135 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT3G11490 373 / 7e-126 rac GTPase activating protein (.1) AT1G08340 352 / 3e-119 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G176800 [exp] 406 / 6e-138 AT2G46710 477 / 3e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.009G162900 [exp] 401 / 4e-136 AT5G22400 457 / 3e-158 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G103600 [exp] 394 / 2e-133 AT2G46710 478 / 2e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.016G078200 [exp] 394 / 3e-133 AT5G22400 482 / 7e-168 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.006G211200 [exp] 389 / 7e-131 AT5G22400 461 / 2e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.004G201600 [exp] 385 / 7e-130 AT5G22400 429 / 3e-147 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024768 [exp] 486 / 1e-170 AT4G03100 475 / 6e-167 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10009778 [exp] 483 / 7e-169 AT4G03100 456 / 7e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10005998 [exp] 411 / 4e-140 AT2G46710 460 / 8e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10030213 [exp] 400 / 1e-135 AT2G46710 440 / 1e-151 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10014213 [exp] 398 / 7e-135 AT5G22400 462 / 4e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10022700 [exp] 395 / 1e-133 AT5G22400 459 / 6e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10020625 [exp] 300 / 6e-98 AT5G22400 362 / 4e-122 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10004864 [exp] 227 / 4e-69 AT5G22400 326 / 6e-108 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0409 [poplar] [flax] GAP PF00620 [poplar] [flax] RhoGAP RhoGAP domain
Representative CDS sequence Show only first row Show all	>Potri.014G135570.1 pacid=42764032 polypeptide=Potri.014G135570.1.p locus=Potri.014G135570 ID=Potri.014G135570.1.v4.1 annot-version=v4.1 ATGACAGGTCTTGTAATGGTGACAAAAGGAGGTGGATGTGGCGGTGGTGTTGGTGGTAAGGGAACGAAAGGGACGAAAAGGAGTGAATTACAAGATCATC AAGAGCAAGTGCAGAACCAGCAGCTGTCTATGATGGCATTTGTATTGACAGCTATAAGGAAATCTCTTGTGGCTTGCCGCATTGAAGATGGAGGAGATGA TGTCATCCCAACAAGCAGCACCCTCCATCACATGGACATTGGCTGGCCCACTAACGTTCAACATATAACTCATGTCACTTTTGATCGCTTCAATGGCTTT CTGGGTCTTCCTGTTGAGTTTGAGGTTGAGATCCCTTGTCGAGTCCCAAGTGCTAGTGCCAGTGTGTTTGGTGTCTCAGCAGAATCAATGCAATGTTCTT ATGATTCGAAAGGAAATAGTGTTCCCACAATTCTCTTGCTGATGCAGGATAGATTATATTCGCAAGGCGGTCTAAAGGCAGAAGGGATTTTCCGCATAAA CCCAGAAAATAGCCAGGAGGAGCATGTGAGGGACCAGCTGAACAGGGGCATTGTGCCTGATGATATTGATGTCCATTGTTTAGCAGGCCTTATAAAAGCC TGGTTTAGAGAGCTTCCTTCTGGGGTGCTGGATGGGCTTTCTCCTGAACAAGTTCTGCAATGTAACACCGAGGAAGAATCTGTTGAGCTTGTTAAGCAAT TAAAGCCAACTGAGGCTGCATTGCTCTCTTGGGCTGTTGGTCTTATGGCTGATGTTGTCGAGGAAGAAGATTCCAATAAAATGAATGCTAGAAATATTGC AATGGTCTTTTCTCCAAACATGACTCAGATGTCTGATCCACTGACAGCATTGATGCATGCTGTACAAGTGATGAACTTGCTCAAAACCCTAATCACGAAA ACGCTGCGAGACCGTGAAGAGACTTCAGCTGGAGGATATTCACCCATGTCGTCTCATTCATCTGGTCACCAAACTGAAACTGATGAGGAATTTGACAGTC AGCACGACATGGAGACCAGCTGTGAGCTGAGACAGGCACCATCGGACTATGATGATCATGCCCATTTCAGCACTGGCAGTGATGAAGAAGCTGACGACGA TGACATTGAGTCATTAAGCGAGGTAGAAGAAAGCTTCTCGAGGCAGTCGGACGAGGATAAAAATTCCACTGATATGTTTGTGGAGCAACCAGCAAGTTTT TCTGGGTCTAAAATGGAGTCTGGACTATCATTCACTGATAGCAAAAATGAAAATTCCAGTTCTGCCTCGAGTGATGGAGAAGATTCAAGGGCAAGTGTGA TAACTGTAGGACAAAAGATTGACATCAGAAGCCAATCCAAAGGATGGAAAGACACTGAAGATGATGAGCAGACGATTGACAAATTAGCAGAGGTCATTTT GACTAAGAAGTCATCTGGGTCTAGTGAATCTGTTTGA
AA sequence Show only first row Show all	>Potri.014G135570.1 pacid=42764032 polypeptide=Potri.014G135570.1.p locus=Potri.014G135570 ID=Potri.014G135570.1.v4.1 annot-version=v4.1 MTGLVMVTKGGGCGGGVGGKGTKGTKRSELQDHQEQVQNQQLSMMAFVLTAIRKSLVACRIEDGGDDVIPTSSTLHHMDIGWPTNVQHITHVTFDRFNGF LGLPVEFEVEIPCRVPSASASVFGVSAESMQCSYDSKGNSVPTILLLMQDRLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPDDIDVHCLAGLIKA WFRELPSGVLDGLSPEQVLQCNTEEESVELVKQLKPTEAALLSWAVGLMADVVEEEDSNKMNARNIAMVFSPNMTQMSDPLTALMHAVQVMNLLKTLITK TLRDREETSAGGYSPMSSHSSGHQTETDEEFDSQHDMETSCELRQAPSDYDDHAHFSTGSDEEADDDDIESLSEVEESFSRQSDEDKNSTDMFVEQPASF SGSKMESGLSFTDSKNENSSSASSDGEDSRASVITVGQKIDIRSQSKGWKDTEDDEQTIDKLAEVILTKKSSGSSESV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03100			Rho GTPase activating protein ...		Potri.014G135570 [exp]	0	1
AT2G25270			unknown protein		Potri.018G023200 [exp]	1.00	0.9446
AT4G23740			Leucine-rich repeat protein ki...		Potri.003G136100 [exp]	1.41	0.9410
AT2G40980			Protein kinase superfamily pro...		Potri.004G137600 [exp]	2.44	0.9285
AT4G05520		ATEHD2	EPS15 homology domain 2 (.1.2)		Potri.011G022300 [exp]	3.31	0.9026
AT5G04160			Nucleotide-sugar transporter f...		Potri.006G046600 [exp]	4.58	0.9345
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Potri.001G392200 [exp]	5.19	0.9042	Pt-GF14.4
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.002G093100 [exp]	5.29	0.9308	Pt-SAH7.1
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.017G088600 [exp]	8.36	0.9174
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.014G102200 [exp]	11.22	0.8884
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.011G092500 [exp]	11.31	0.9087

Compare expression of checked genes

Potri.014G135570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.