Plant FIBer expression Database

Potri.014G135590 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G63000 609 / 0 NPL41 NPL4-like protein 1 (.1)
AT2G47970 594 / 0 Nuclear pore localisation protein NPL4 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G213600
[exp]
689 / 0 AT3G63000 596 / 0.0 NPL4-like protein 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017163
[exp]
649 / 0 AT3G63000 670 / 0.0 NPL4-like protein 1 (.1)
Lus10021567
[exp]
644 / 0 AT3G63000 666 / 0.0 NPL4-like protein 1 (.1)
Lus10027618
[exp]
310 / 2e-105 AT2G47970 289 / 1e-98 Nuclear pore localisation protein NPL4 (.1.2)
Lus10027617
[exp]
158 / 6e-42 AT5G12080 839 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0366 JAB PF05021 NPL4 NPL4 family
CL0072 Ubiquitin PF11543 UN_NPL4 Nuclear pore localisation protein NPL4
Representative CDS sequence
>Potri.014G135590.1 pacid=42762964 polypeptide=Potri.014G135590.1.p locus=Potri.014G135590 ID=Potri.014G135590.1.v4.1 annot-version=v4.1
ATGATGATTCGAATCCGCAGCAGAGACGGGCTGGAACGCGTCTCTATCGACAACCCAAACATCACAATTTCCCAATTCAAAACTCTAATCCAAAACCAAC
TCCAAATCCCTATCCACAACCAAACCCTCTCCACTAACCAAAACCTCCTCCTAGCCAAATCCCCTCCCGATCTCCTCCAATTCACCGACATGTCAAACCC
TAGCACCCTTCTCTCTTCCCTCAACATCTCTCACGGCTCCATTATTTTCTTAGCCTACGAAGGCCACAGAACTATTGCGGGCCCCGCTGTTCACCCTGCT
GGTTCTTTCGGCCGTAAGATGACAATGGACGATCTCATTGCCAAACAGATGAGAGTCGGCCGGCAAGAAAATCCGCACTGCGATTCGGTGTCGTTTGATC
GCGATTGCGCTAATGCGTTCCAGCATTATGTTAATGAAACGCTCGCGTTTGCTGTTAAAAGAGGTGGGTTTATGTATGGAACGGTGTCGGAGGAGGGGAA
GGTTGAAGTCAATTTCATATACGAGCTGCCGCAGCAGGGGACTGAAGAGATTTTGATGCTTTTGAGGGATTCTGATGAAGAAAAAATAGTGGACGCGATT
GCGGCGGGCTTGGGGATGAGGAGAGTGGGGTTTATATTCAATCAGACTATAATGCATGACAAAAAAGATTATACTTTGTCGAATAGGGAGGTTCTTCAGG
CGGCGGAGCTGCACGCTGAGAGTGAGTTGAAGGAGTGGGTTACTGCGGTGGTGAAGTTGGAGGTGAATGAGGACGGGGGAGCTGATGTGCACTTCGAGGC
GTTTCAGATGAGTGATATGTGTATTAGGTTGTTTAAAGAAGGATGGTTCGAGACGGAGATTGGGGAAGATGTGGATCCTAAGTTGTCTATAATGAAGAAA
GATGTGGTTGTTGGTAGCAAGGATGTTAAGGAGGTTGATAATGATTTCTTCTTGGTCGTTATTAAGATTCTCGATCATCTGGGCCCTCTTTCAACAACCT
TCCCCATTGAGAACAGGATTACCCAAGTGACAATGAGAGCATTGAGGAGTCATCTGGACCGTGCAAAGAATCTTCCATTTGTGAAGAGAATTTCTGATTT
TCATCTCTTGCTATTTCTGGCCAAGTTTCTAGACCTCAATTCTGATGTTCCGGCATTGGCAGAGTGTGTGCTTACACAGACAGCAGTACCAGAAGGTTAT
CAGCTCCTAATTGAGTCCATGGCTAATACTTCTTGA
AA sequence
>Potri.014G135590.1 pacid=42762964 polypeptide=Potri.014G135590.1.p locus=Potri.014G135590 ID=Potri.014G135590.1.v4.1 annot-version=v4.1
MMIRIRSRDGLERVSIDNPNITISQFKTLIQNQLQIPIHNQTLSTNQNLLLAKSPPDLLQFTDMSNPSTLLSSLNISHGSIIFLAYEGHRTIAGPAVHPA
GSFGRKMTMDDLIAKQMRVGRQENPHCDSVSFDRDCANAFQHYVNETLAFAVKRGGFMYGTVSEEGKVEVNFIYELPQQGTEEILMLLRDSDEEKIVDAI
AAGLGMRRVGFIFNQTIMHDKKDYTLSNREVLQAAELHAESELKEWVTAVVKLEVNEDGGADVHFEAFQMSDMCIRLFKEGWFETEIGEDVDPKLSIMKK
DVVVGSKDVKEVDNDFFLVVIKILDHLGPLSTTFPIENRITQVTMRALRSHLDRAKNLPFVKRISDFHLLLFLAKFLDLNSDVPALAECVLTQTAVPEGY
QLLIESMANTS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G63000 NPL41 NPL4-like protein 1 (.1) Potri.014G135590
[exp]
0 1
AT3G22630 PRCGB, PBD1 20S proteasome beta subunit D1... Potri.010G084800
[exp]
6.32 0.8158 PBD2.2
AT1G61620 phosphoinositide binding (.1) Potri.004G026800
[exp]
10.72 0.8225
AT4G26000 PEP PEPPER, RNA-binding KH domain-... Potri.018G004000
[exp]
12.24 0.8455
AT4G27680 P-loop containing nucleoside t... Potri.015G007700
[exp]
15.09 0.8205
AT5G53330 Ubiquitin-associated/translati... Potri.015G023600
[exp]
15.96 0.8274
AT5G23140 NCLPP7, NCLPP2,... nuclear-encoded CLP protease P... Potri.007G071700
[exp]
16.55 0.8302
AT2G23310 ATRER1C1, ATRER... Rer1 family protein (.1.2) Potri.005G141700
[exp]
18.57 0.8026
AT1G75140 unknown protein Potri.002G262900
[exp]
19.51 0.7523
AT3G04610 FLK flowering locus KH domain, RNA... Potri.005G056100
[exp]
22.62 0.8187
AT1G07310 Calcium-dependent lipid-bindin... Potri.008G064900
[exp]
26.15 0.7955

Potri.014G135590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.