Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03090 693 / 0 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G213400 [exp] 1496 / 0 AT4G03090 638 / 0.0 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006938 [exp] 665 / 0 AT4G03090 450 / 6e-148 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2) Lus10024746 [exp] 513 / 6e-173 AT4G03090 281 / 4e-85 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2) Lus10024745 [exp] 407 / 1e-131 AT4G03090 290 / 2e-88 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2) Lus10006937 [exp] 345 / 1e-109 AT4G03090 173 / 3e-47 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G135700.2 pacid=42762634 polypeptide=Potri.014G135700.2.p locus=Potri.014G135700 ID=Potri.014G135700.2.v4.1 annot-version=v4.1 ATGAGGCTTGCTAAGGAAGAACTGTCTATGGCTGAACAAGTCATTGATTTAATTTCAGCAGTGAAAGAGTTACACGGTCTTAGCTCTCAGGAGCTTAACA AATTGTTAAGGGACTCTGAAAATTTTACAATTCACTTTCATTCTGAAAAGGGATCAACGACAAAGATTGATGTGGAAAAACTGGCAGGCTTTCTTCCTTT ACACCTTATTGCAGTGCTTATGTCATCTGATAGAGATGAATCGCTGTTGAGATATTTGTTGTGCGGGATTCGGCTTTTGCATTCCTTGTGTGATCTAGGA CCTCGGAACAGTAAACTTGAGCAGGTTTTGCTTGATGATGTTAAAGTATCAGAGCAGCTGCTGGATCTGGTGTTTTATTTACTAATTGTTCTTGGTGGTT ATAGACAGGAAAACCTTAATTCATGCTCTTTGTTACTTGTGCATTCAGCACTTGTGGCATCCAGTCTACATTTATTGTCAGGATGTATATCTTCACAATG GCAAGATCTTGTTCAAGTATTGCTTGCTCACCCCAAGGTTGACATATTTATGGATGCAGCTTTTGGTGCTGTTCATGTAGCCATTAGGTTTCTTCAGGTC AAGCTATCAGATCAACATACTGGCCTTCATGTGAAAAGTCCAACAGCTGAACAAATAGTTAATTATATCTGCCAACAATGTGAGGCTTCTTTACAGACTC TTCAGTCATTGTGCCAGCAAAAGATGTTCCGCGAGCGCCTTCTTAGGAACAAGGAACTATGTGGAAGGGGAGGTGTTCTTTTTCTGGCCCAGGCCATCTT GAAGTTAAACATCACGCCTCCTTTTGTAGATTCTTTCACAGTTGTAGCTGCAGTATCTAGACTGAAGGCTAAAGTATTATCGATTCTATTGCATCTGTGT GAAGCAGAAAGCATTTCTTACCTTGATGAGGTTGCAAGCTCTCCATGGAGCCTTGATTTGGCAAAGTCTGTAGTATTAGAGATTCTTGAATTACTGAAGG CTGCACTTAGCAAAGATCCCAATCATCTTAGTCCATGTTCAGACAGAACTTTTCCCATGGGGCTTTTGCGACTCAATGCAATGCGTCTGGCTGATATCTT CTCAGATGATTCAAATTTTAGATCTTATATCACAACATGCTTTACCAAAGTTCTGACTGCTATATTTTCGCTCCCTCATGGAGATTTTTTATCAATTTGG TGTTCTTCTGAATTTCCACCAAGAGAAGAAGATGGTACTCTGGAGTATGATGCATTTACAGCAGCTGGGTGGTTTTTGGACACATTTGCAGCAGCGAACC AATCAAATGCAATAAATTTAGAAATCACTTTAATTCCCAGCAACATGCCCCAAGCTATGTATGCACATCAGAGAACTTCATTATTTGTGAAGCTAATTGC CAACCTCCACTGTTTTGTTCCAAACATATGTGAAGAGCAGGAAAGAAACTTGTTCCTTCATAAGTTTCTGGAGTGCATGCGGATGGACCCATCTAAGTCA TTGCCTGGGTTTTCCTTTACTTCTGGTGCTCTAAGAGCCGTAACAGTTTGCAGGAACCTTCGTTCATTGTTAAGTCATGCAGAGTCTCTAATTCCTAACT TTTTGAATGAGGAGGATGTACAGCTGCTAAGGGTATTCTTTAACCAGTTACAATCACTGATTAATCCTACTGATTTTGAAGAAAACCAAGTTCAAGAAAT CAAATCTGAGAGGTCAATATCTTTGGATAAGTTCTGTAGACTTACTATTGATGAGCATCTTCAGGAAGCTCAAAGCACTGGGGCATACGGATCACCTATG GTGATGAAGGAACCTTCACATCTTTACAACAGGACAGATATCCAAAAAGAGGAAATGTCAGAGAATTCAGCTATCCAAGAAGAGGAGAAGCCCAATTTCA AAAATAGGAATCAAGCAGAAGATGCAATTAAGGAAGACAAAGCTAAACCTGGTGCATGTGTATCTGATGTTTTAAGAGAGATTGATAGAGATGCTCATAC TGTTGAAACAAGTGGTTCAGATACAAGTTCCACTAGAGGGAAGACTTATGCAGGTCAAGTGGTGAATGGTGACTTTCTAAAATCAAGTGAGCATATAAAA CGAAATGGTTGTCAGGGAGTTTGTGGTGGTGAGAAAGTTGAAAGTCCTCATTTTGAAGAAAAGCAGCCAAGAAAAAGGAAGCGGACTATTATGAATGACC ATCAAATCACACTTATGGAGAAAGCCCTGCTAGATGAACCTGAGATGCAGAGAAATGCAGCAGCGTTACAGTCATGGGCTGATAAATTGAGTCTTCATGG ATCAGAAGTTACACCTTCACAACTGAAAAATTGGCTCAACAATCGCAAAGCGAGGTTAGCTCGTGCAGGCAAGGATGTCCGTGCACCAATGGAGGTTGAT AATACATTTCCAGAAAAACAAGTTGGACAAGCGCAGCAGCAGGACACACCTGAGAGCCCCAGTGAAGACAACATCACATCGAGTGCAAGAGGCCTTCAAA ACACATCAGAAATTGGCGTGTTTGGAGATCCCGAGGCTGGGATAGGATTGGCAGACTTTGTTGACATTGGTGCTTCAGAATTTGTTCAGTGCAAGCCAGG GCAGTTTGTTGTGCTTGTAGACGGGCAAGGAGAAGAGATTGGTAAGGGAAAGGTATATCAGGTGCAAGGCAAATGGTATGGAAGGATATTGGAGGAATCA GAGATGTGTGTCGTGGATGTTACAGAGCTCAAGACTGAGAAATGGGTGAGGCTTCCATACCCATCCGAAACCACAGGCATGTCATTTTATGAAGCTGAAC AGAAGATTGGGGTGATGAGAGTGTTGTGGGATTCGAACAAAATATACATGTCACGACCTCAATGCTAG
AA sequence Show only first row Show all	>Potri.014G135700.2 pacid=42762634 polypeptide=Potri.014G135700.2.p locus=Potri.014G135700 ID=Potri.014G135700.2.v4.1 annot-version=v4.1 MRLAKEELSMAEQVIDLISAVKELHGLSSQELNKLLRDSENFTIHFHSEKGSTTKIDVEKLAGFLPLHLIAVLMSSDRDESLLRYLLCGIRLLHSLCDLG PRNSKLEQVLLDDVKVSEQLLDLVFYLLIVLGGYRQENLNSCSLLLVHSALVASSLHLLSGCISSQWQDLVQVLLAHPKVDIFMDAAFGAVHVAIRFLQV KLSDQHTGLHVKSPTAEQIVNYICQQCEASLQTLQSLCQQKMFRERLLRNKELCGRGGVLFLAQAILKLNITPPFVDSFTVVAAVSRLKAKVLSILLHLC EAESISYLDEVASSPWSLDLAKSVVLEILELLKAALSKDPNHLSPCSDRTFPMGLLRLNAMRLADIFSDDSNFRSYITTCFTKVLTAIFSLPHGDFLSIW CSSEFPPREEDGTLEYDAFTAAGWFLDTFAAANQSNAINLEITLIPSNMPQAMYAHQRTSLFVKLIANLHCFVPNICEEQERNLFLHKFLECMRMDPSKS LPGFSFTSGALRAVTVCRNLRSLLSHAESLIPNFLNEEDVQLLRVFFNQLQSLINPTDFEENQVQEIKSERSISLDKFCRLTIDEHLQEAQSTGAYGSPM VMKEPSHLYNRTDIQKEEMSENSAIQEEEKPNFKNRNQAEDAIKEDKAKPGACVSDVLREIDRDAHTVETSGSDTSSTRGKTYAGQVVNGDFLKSSEHIK RNGCQGVCGGEKVESPHFEEKQPRKRKRTIMNDHQITLMEKALLDEPEMQRNAAALQSWADKLSLHGSEVTPSQLKNWLNNRKARLARAGKDVRAPMEVD NTFPEKQVGQAQQQDTPESPSEDNITSSARGLQNTSEIGVFGDPEAGIGLADFVDIGASEFVQCKPGQFVVLVDGQGEEIGKGKVYQVQGKWYGRILEES EMCVVDVTELKTEKWVRLPYPSETTGMSFYEAEQKIGVMRVLWDSNKIYMSRPQC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03090			sequence-specific DNA binding;...		Potri.014G135700 [exp]	0	1
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Potri.010G064700 [exp]	2.82	0.8344
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	3.00	0.8576
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.005G080600 [exp]	6.63	0.8219
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Potri.010G170400 [exp]	6.78	0.8573
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Potri.001G253200 [exp]	10.00	0.7891
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	11.53	0.8360
AT1G19290			Pentatricopeptide repeat (PPR)...		Potri.014G040200 [exp]	12.32	0.8431
AT5G22450			unknown protein		Potri.008G020600 [exp]	14.07	0.8303
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.008G047700 [exp]	15.29	0.8362
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.003G223400 [exp]	15.49	0.8460

Compare expression of checked genes

Potri.014G135700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.