Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PP1.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03080 1441 / 0 BSL1 BRI1 suppressor 1 (BSU1)-like 1 (.1) AT1G08420 1046 / 0 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT2G27210 660 / 0 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT1G03445 493 / 3e-162 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT5G59160 286 / 2e-89 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT3G46820 284 / 1e-88 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT2G29400 276 / 2e-85 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT5G27840 270 / 3e-83 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT2G39840 270 / 4e-83 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT1G64040 263 / 2e-80 TOPP3 type one serine/threonine protein phosphatase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G213300 [exp] 1580 / 0 AT4G03080 1439 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.001G215700 [exp] 664 / 0 AT2G27210 1626 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.009G016900 [exp] 657 / 0 AT2G27210 1588 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.001G245700 [exp] 285 / 7e-89 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.009G037700 [exp] 282 / 6e-88 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.013G045900 [exp] 278 / 3e-86 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 277 / 1e-85 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G060800 [exp] 273 / 1e-84 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.010G197600 [exp] 271 / 8e-84 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013357 [exp] 1050 / 0 AT1G08420 1713 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10004100 [exp] 1025 / 0 AT1G08420 1686 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10024773 [exp] 886 / 0 AT4G03080 853 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Lus10009783 [exp] 734 / 0 AT2G27210 1281 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Lus10008369 [exp] 654 / 0 AT1G08420 1747 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10024772 [exp] 441 / 1e-149 AT4G03080 478 / 5e-165 BRI1 suppressor 1 (BSU1)-like 1 (.1) Lus10016489 [exp] 278 / 2e-86 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10011827 [exp] 276 / 5e-85 AT2G39840 513 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004692 [exp] 274 / 1e-84 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004989 [exp] 274 / 1e-84 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0186 [poplar] [flax] Beta_propeller PF13854 [poplar] [flax] Kelch_5 Kelch motif CL0186 [poplar] [flax] PF16891 [poplar] [flax] STPPase_N Serine-threonine protein phosphatase N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G135800.3 pacid=42763614 polypeptide=Potri.014G135800.3.p locus=Potri.014G135800 ID=Potri.014G135800.3.v4.1 annot-version=v4.1 ATGGGATCCAAGCCATGGCTACACCCAGCTCCCACCTATCGGACCTTAGAGACTTACTGGGATTCCGATGATGACGCTCCTGGTTCTCGATGTGCTCACA CCTTGACTGCCGTTGCTGCTACCAAGTCTCAAGGTCCTCGACTCATCCTCTTCGGTGGTGCCACCGCTATCGAGGGCGGGGCTTCCTCCGCTCCTGGAAT CAGATTGGCTGGAGTCACCAATTCAGTTCATTCTTATGATGTTCTTACTAGGAAATGGACTAGAGTACAACCAGCTGGAGAGCCACCGTCTCCAAGGGCT GCGCACGCGGCAGCTGCAGTTGGTACTATGGTTGTTTTTCAGGGTGGGATAGGTCCTGCTGGGCATTCCACTGATGATCTCTATGTGCTTGACTTGACCA ACGACAAATTCAAGTGGCACCGAGTGGTTGTACAAGGACAAGGACCTGGGCCTCGATATGGCCATGCAATGGACTTGGTTGCCCAAAGGTACCTTGTTAC TGTCAGCGGCAATGATGGTAAAAGAGTTCTATCTGATGCCTGGGCTCTGGACACTGCCCAGAAACCATATGTATGGCAGAGGCTAAATCCTGAAGGTGAT AGACCTAGTGCTCGAGTGTATGCAACAGCTAGTGCCCGTTCAGATGGAATGTTTTTGCTTTGTGGCGGAAGAGACTCCTCTGGCACGCCACTCGGAGATG CTTATGGACTTCTAATGCATAGAAACGGTCAGTGGGAGTGGACTCTTGCACCTGGGGTGTCTCCATCATCAAGGTATCAACATGCTGCGGTTTTTGTTGG TGCGCGTTTGCATGTTACAGGAGGATCCCTAAAGGGAGGACGTTTAGTAGAAGGGGAAGCAGCTGTTGCTGTGTTGGACACTGCTGCTGGTGCTTGGTTG GATAGAAATGGGCTAGTGACTTCGTCCAAAACCAGCAAGGGACATGCTGAATATGATCCTTCTTTTGAGTTAATGCGTCGTTGTCGCCATGCATCTGCAT CTGTTGGTGTTCGTATATATGTCTACGGTGGTCTAAAAGGAGATGCAGTGCTAGATGATTTTCTGGTTGCTGAAAATTCCCCGTTTCAGCCAGACATCAA TTCTCCCACATTAACATCTGAGAGAGCCTCAACAATAACAAGTCCCAGACTAAACCATTCAAATTTAAATTCTTTTGGAACTTCTACTCCAGATGGTGGA CCGGAGATCCCTTTATCTGGTGGTATCAGCAGCATGGACAGAAATTCCATGGAGAAATTGAGGGAGGCATCTGCTGCTGAAGCTGAGGCAGCCAATGCTG TCTGGCAAGCTGCTCAGGCAGCATCTACCAATTCTGCAGAAGAAACATCTGTATCTGATGACAACTCACAAGCTGCAGAAGCAACTTCAGATGGCAGTGA CAACGAGGCTGATGTCCGCCTCCATCCTAGAGCTGTGGTGGTTGCTAAAGAGACTGTAGGAAACCTGGGTGGGATGGTGAGGCAATTGTCATTGGATCAA TTCGAAAATGAAAGTAGAAGGATGGTTCCTATGAATAACGATGCATCTAATCCTGCTAAAAAGTTCACCAGGCAAAGGTCTCCTCAGGGCCTGCATAAGA AGATTATTTCCACTTTGCTTAGGCCTCGGAACTGGAAAGCTCCTGCTAATAGGAGATTTTTCCTGGATTCTTATGAAGTTGGTGAGCTTTGTTATGCAGC TGAACAGATATTTATGCAAGAGCCAACGGTTCTGCAATTGAGAGCCCCGATAAAAGTCTTTGGTGATCTTCATGGACAGTTTGGTGACTTAATGCGTCTA TTTGATGAATATGGATTTCCATCCACAGCAGGAGACATTACGTATATTGACTATTTATTTCTGGGAGACTATGTTGATCGAGGGCAGCACAGTTTGGAGA CCATGACTTTGCTTCTTGCTCTAAAGATTGAGTATCCTGAGAATGTCCACTTGATACGTGGAAACCACGAAGCTGCTGATATAAATGCACTCTTTGGTTT TCGTATTGAATGCATTGAAAGAATGGGAGAGAGTGATGGGATATGGGCATGGACACGTTTCAATCAACTTTTCAACTATCTTCCACTTGCTGCACTTATT GAGAAGAAAATTATCTGTATGCATGGTGGCATAGGGAGATCCATTCATTCAGTGGAACAGATAGAGAAGCTTGAAAGGCCCATAACTATGGATGCTGGAT CTATAATTCTAATGGATCTTCTATGGTCGGATCCTACAGAAAATGATAGCATAGAGGGGTTGAGACCAAATGCTAGGGGCCCTGGTCTTGTCACCTTTGG GCCTGATCGTGTAACCGACTTCTGTAAGAAAAATAAGTTACAGCTAATCATTAGGGCACATGAATGTGTTATGGATGGGTTTGAACGATTTGCCCAAGGG CAATTGATTACTCTATTTTCTGCAACCAACTATTGTGGGACTGCTAACAATGCTGGAGCTATACTGGTAGTTGGCAGGGGTCTGGTTGTGGTTCCAAAAT TGATTCATCCCTTGCCACCTCCCCTTCAGTCACCAGAGACATCTCCAGAACATGTGATTGATGATACATGGATGCAGGAGCTTAACATCCAAAGACCTCA AACTCCAACACGGGGTCGCCCTCAACCTGATCATGACAGAAGCTCACTTGCGTACATATGA
AA sequence Show only first row Show all	>Potri.014G135800.3 pacid=42763614 polypeptide=Potri.014G135800.3.p locus=Potri.014G135800 ID=Potri.014G135800.3.v4.1 annot-version=v4.1 MGSKPWLHPAPTYRTLETYWDSDDDAPGSRCAHTLTAVAATKSQGPRLILFGGATAIEGGASSAPGIRLAGVTNSVHSYDVLTRKWTRVQPAGEPPSPRA AHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHAMDLVAQRYLVTVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGD RPSARVYATASARSDGMFLLCGGRDSSGTPLGDAYGLLMHRNGQWEWTLAPGVSPSSRYQHAAVFVGARLHVTGGSLKGGRLVEGEAAVAVLDTAAGAWL DRNGLVTSSKTSKGHAEYDPSFELMRRCRHASASVGVRIYVYGGLKGDAVLDDFLVAENSPFQPDINSPTLTSERASTITSPRLNHSNLNSFGTSTPDGG PEIPLSGGISSMDRNSMEKLREASAAEAEAANAVWQAAQAASTNSAEETSVSDDNSQAAEATSDGSDNEADVRLHPRAVVVAKETVGNLGGMVRQLSLDQ FENESRRMVPMNNDASNPAKKFTRQRSPQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPIKVFGDLHGQFGDLMRL FDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETMTLLLALKIEYPENVHLIRGNHEAADINALFGFRIECIERMGESDGIWAWTRFNQLFNYLPLAALI EKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVTDFCKKNKLQLIIRAHECVMDGFERFAQG QLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPPLQSPETSPEHVIDDTWMQELNIQRPQTPTRGRPQPDHDRSSLAYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Potri.014G135800 [exp]	0	1	PP1.6
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.009G102900 [exp]	15.16	0.7412
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Potri.018G021100 [exp]	15.81	0.7354	PKL.1
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121750 [exp]	22.24	0.7206
AT1G65540			LETM1-like protein (.1)		Potri.008G078600 [exp]	22.36	0.7245
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.001G298400 [exp]	22.91	0.7011
AT1G07650			Leucine-rich repeat transmembr...		Potri.001G308600 [exp]	24.37	0.7409
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.004G104201 [exp]	31.11	0.7268
AT3G14470			NB-ARC domain-containing disea...		Potri.017G128000 [exp]	31.46	0.7031
AT2G47410			WD40/YVTN repeat-like-containi...		Potri.014G121100 [exp]	39.34	0.7181
AT5G49830		EXO84B	exocyst complex component 84B ...		Potri.008G009100 [exp]	39.79	0.6523

Compare expression of checked genes

Potri.014G135800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.