Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03020 741 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 91 / 1e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 82 / 7e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 82 / 2e-16 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 82 / 3e-16 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 82 / 4e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 80 / 1e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 69 / 4e-12 PRL1 pleiotropic regulatory locus 1 (.1) AT4G02730 67 / 4e-12 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 68 / 5e-12 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G026800 [exp] 649 / 0 AT4G03020 676 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G197200 [exp] 511 / 2e-180 AT4G03020 534 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G096900 [exp] 91 / 9e-20 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 82 / 3e-16 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 81 / 6e-16 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 81 / 8e-16 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 77 / 3e-15 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 74 / 2e-14 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 70 / 2e-12 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042682 [exp] 759 / 0 AT4G03020 749 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10029621 [exp] 649 / 0 AT4G03020 658 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10012779 [exp] 611 / 0 AT4G03020 629 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10033996 [exp] 605 / 0 AT4G03020 629 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10012230 [exp] 85 / 1e-17 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 86 / 3e-17 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 86 / 3e-17 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 82 / 4e-17 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 81 / 1e-16 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 79 / 6e-16 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G136000.1 pacid=42763829 polypeptide=Potri.014G136000.1.p locus=Potri.014G136000 ID=Potri.014G136000.1.v4.1 annot-version=v4.1 ATGTATTTTTTTGCTAGAAGAACTTCGGTAGACGAAATGGGTTACGCTATGAGCAGACTGGAGACTGAATCTGAACTCTGTGATGGTGGCAAGACCATTC CTGAGGCTGGTAGCAGCAAGAGAGCCAGCAATTGGTTGAATAACTTAGACCATGAAATTGCTCAGGTTACGAAGTTGAAATCTAGTCCGCATAAACAGCT GGCCGAACTTGTTCCCGGCATGCATAAGTCATCTGTTTCCACTGTTAAGATGTTGGTTGGTCGAGAAGCTAATTATTCAGCAAGGGGAAGATTCTCTGCA GCTGATCGTTGTCACATGCTTAGCAGATATTTGCCTGTCAATGGACCTTGGCTTGTTGACCAGATGAGTACCCGAGCCTATGTCTCGCAGTTTTCAGCTG ATGGCTCTCTATTTGTTGCTGGGTTTCAGGGAAGCTATATTAGAATATACAATGTGGAGAAGGGGTGGAAAGTTCAGAAGAACATTCTTGCCAAAAGTTT GCGTTGGACTGTTACCGATACATCTCTTTCCCCAGATCAGCGCCATCTCGTTTATGCAAGCATGTCACCTATTGTCCATATTGTTGATGCTGGGTCTGCC GAAACAGAGTCGCTTGCAAACGTTACGGAGTTTCATGACGGATTGGACTTTTCTTCTGGTGATGGGGGCTATTCTTTTGGAATCTTCTCTGTGAAATTTT CCACTGATGGGCGAGAACTTGTTGCAGGAAGTAATGATGACTCCATATATGTCTACGACCTTGAACAAAATAAGCTCTCCCTCAGAATTTTGGCACACAC GTCTGATGTTAACACTGTATGTTTTGCTGATGAAAGTGGCCACCTTATCTTTTCTGGGAGTGATGATAATCTTTGCAAGGTGTGGGATAGACGCTGCTTT ATTGCAAAAGGGAAGCCAGCTGGAGTCCTAACAGGACACTTAGAAGGCATAACATTTATTGACAGCCATGGAGATGGTCGGTATTTTATCTCAAATGGTA AAGATCAGACTATCAAACTTTGGGATATTCGGAAAATGGCCCCTAATGCTACTAGCTATTCAGGGCTTAGGAATTATGAATGGGACTACAGGTGGATGGA CTACCCATATGAGGCAAGAGATTTGAAACACCCCTGCGATCAATCAGTAGCCACATATAAAGGTCATTCGGTTCTGCGCACTCTTATCCGCTGCTACTTT TCTCCTGTATATAGTACTGGCCAGAAGTACATCTACACTGGATCTCATGATTCTTGTGTTTATATTTATGACTTGGTGACTGGAGAACTAGTTTCATTAC TACAACATCATAAATCACCTGTAAGAGATTGTAGTTGGCACCCATATTATCCCATGCTCGTCAGCTCTTCTTGGGACGGAGATGTCGTAAAATGGGAGTT TCCTGGCAATGGAGAAGCTCCAGTCCCTTCAACCAAGAAGAGAATTCGAAGGAGACAATTTGATTGA
AA sequence Show only first row Show all	>Potri.014G136000.1 pacid=42763829 polypeptide=Potri.014G136000.1.p locus=Potri.014G136000 ID=Potri.014G136000.1.v4.1 annot-version=v4.1 MYFFARRTSVDEMGYAMSRLETESELCDGGKTIPEAGSSKRASNWLNNLDHEIAQVTKLKSSPHKQLAELVPGMHKSSVSTVKMLVGREANYSARGRFSA ADRCHMLSRYLPVNGPWLVDQMSTRAYVSQFSADGSLFVAGFQGSYIRIYNVEKGWKVQKNILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDAGSA ETESLANVTEFHDGLDFSSGDGGYSFGIFSVKFSTDGRELVAGSNDDSIYVYDLEQNKLSLRILAHTSDVNTVCFADESGHLIFSGSDDNLCKVWDRRCF IAKGKPAGVLTGHLEGITFIDSHGDGRYFISNGKDQTIKLWDIRKMAPNATSYSGLRNYEWDYRWMDYPYEARDLKHPCDQSVATYKGHSVLRTLIRCYF SPVYSTGQKYIYTGSHDSCVYIYDLVTGELVSLLQHHKSPVRDCSWHPYYPMLVSSSWDGDVVKWEFPGNGEAPVPSTKKRIRRRQFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03020			transducin family protein / WD...		Potri.014G136000 [exp]	0	1
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.001G189800 [exp]	2.23	0.8498
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Potri.010G099300 [exp]	12.00	0.8244
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Potri.014G071100 [exp]	12.72	0.7597
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Potri.006G086200 [exp]	17.14	0.8494
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.008G011300 [exp]	17.32	0.8321	CMEIL2.2,EIN3D
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Potri.004G201400 [exp]	19.28	0.8330	Pt-NLP1.2
AT1G25480			Aluminium activated malate tra...		Potri.008G118600 [exp]	21.49	0.7949
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Potri.005G040600 [exp]	23.55	0.8326
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Potri.004G140600 [exp]	25.25	0.7844	ABF1.1
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G230000 [exp]	26.40	0.7906

Compare expression of checked genes

Potri.014G136000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.