Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03440 541 / 0 Leucine-rich repeat (LRR) family protein (.1) AT4G03010 530 / 0 RNI-like superfamily protein (.1) AT3G17640 239 / 2e-75 Leucine-rich repeat (LRR) family protein (.1) AT3G59510 135 / 1e-35 Leucine-rich repeat (LRR) family protein (.1) AT2G26330 129 / 3e-32 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT3G12610 117 / 2e-29 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G51740 119 / 6e-29 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT2G15320 116 / 6e-29 Leucine-rich repeat (LRR) family protein (.1) AT1G73066 116 / 5e-28 Leucine-rich repeat family protein (.1) AT5G07180 113 / 8e-27 ERL2 ERECTA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G001000 [exp] 260 / 4e-83 AT3G17640 386 / 1e-132 Leucine-rich repeat (LRR) family protein (.1) Potri.011G023500 [exp] 257 / 4e-82 AT3G17640 350 / 2e-118 Leucine-rich repeat (LRR) family protein (.1) Potri.006G220100 [exp] 122 / 9e-30 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G301400 [exp] 117 / 2e-29 AT2G15320 429 / 6e-150 Leucine-rich repeat (LRR) family protein (.1) Potri.006G104300 [exp] 118 / 1e-28 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.010G183400 [exp] 117 / 2e-28 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.017G028600 [exp] 112 / 2e-27 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.005G030800 [exp] 114 / 4e-27 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G028400 [exp] 112 / 4e-27 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008190 [exp] 560 / 0 AT1G03440 576 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10029622 [exp] 517 / 0 AT1G03440 534 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10031601 [exp] 440 / 3e-154 AT1G03440 463 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10027967 [exp] 276 / 3e-91 AT1G03440 268 / 3e-92 Leucine-rich repeat (LRR) family protein (.1) Lus10042681 [exp] 218 / 3e-68 AT4G03010 205 / 1e-63 RNI-like superfamily protein (.1) Lus10027968 [exp] 169 / 4e-52 AT1G03440 160 / 2e-49 Leucine-rich repeat (LRR) family protein (.1) Lus10025578 [exp] 113 / 1e-27 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10037705 [exp] 110 / 1e-26 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10004032 [exp] 111 / 4e-26 AT2G45340 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011585 [exp] 111 / 4e-26 AT5G65700 1044 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.014G136100.1 pacid=42763089 polypeptide=Potri.014G136100.1.p locus=Potri.014G136100 ID=Potri.014G136100.1.v4.1 annot-version=v4.1 ATGACAATGCACCCATTAAGATCATGCTTTTCCGTTTTGTTCGTTGTCTATCTTCTTCAATGTAAATTGTTTTTTGTGCATTGTATTTTAGACCCACTTG ATTTCTTAGCTCTACAATCCGTTAGAAAATCCTTAGACGACATGCCTGGTTCCAACTTCTTTGCTTCATGGGACTTCACTTCTGATCCTTGCAACTTCGC TGGAGTGTATTGTGAATCAGACCGGGTGATCGCTCTCAACTTGGGCGATCCTCGTGCAGGGTCTCCTGGTCTAATAGGCCGACTCGACCCTGCCATTGGC AAGCTCTCTTCTCTGACTGAACTCTCTGTTGTTCCAGGTCGAATCATGGGTTCTCTCCCGCAATCAATCTCCCAATTAAAAGACCTTCGCTTTCTCGCTA TCAGCCGGAACTTCCTCTCCGGCGGGATACCGGCAACTCTAGGCCAGTTACGCAACCTCAAAACCCTTGATCTCAGCTACAATCAGCTCACCGGAGATAT CCCTCGCTCTATAGGTACCATACCAGGGCTCTCCAATGTCATTCTCAGCCACAACCGCATCTCCGGTTCGGTCCCACCATTTCTCTCAGAAACTCTAACC CGGCTCGAGTTGAAACACAACGAACTCTCTGGTTCCATCTCGCCAACCTCCCTCCCTCCTTCGCTGCAATACCTCTCTCTTTCCTGGAACCGCCTCTCCG GTCCGGTCGACTTGTTATTGATCCGGCTCGACCGGTTAAACTATCTGGACCTGAGTGTGAACCAGTTCTCGGGCTGTATTCCGAGTCGAATCTTCACATT CCCCATAACCAACCTTCAACTGCAGAGAAATTCGTTTTCTGGTCCGGTTCAACCGGGAGGTGAGGTGGCAATACCGACCGTTGATCTTAGCTACAACAGA TTGTCGGGTGGAGTATCGCCCATGTTCTCAACCGTACAGAATTTGTATCTGAATAATAACCGGTTCATAGGACAGGTTCCGGGTAGTTTTGTGGACCGGT TAATGGATGCGAGCATACAAGTACTTTATTTGCAGCATAATTATTTAACAGGGATGCAGATTAATCCAACGGTTGAGATTCCCTTGAGCAGTTCGCTGTG CTTGCAGTATAATTGTATGGTGCCGCCCATACAGACGCCGTGCCCCTTGAAGGCCGGAAAGCAGAGGACAAGGCCTACCGCACAGTGCAACGAATGGAGG GGGTAA
AA sequence Show only first row Show all	>Potri.014G136100.1 pacid=42763089 polypeptide=Potri.014G136100.1.p locus=Potri.014G136100 ID=Potri.014G136100.1.v4.1 annot-version=v4.1 MTMHPLRSCFSVLFVVYLLQCKLFFVHCILDPLDFLALQSVRKSLDDMPGSNFFASWDFTSDPCNFAGVYCESDRVIALNLGDPRAGSPGLIGRLDPAIG KLSSLTELSVVPGRIMGSLPQSISQLKDLRFLAISRNFLSGGIPATLGQLRNLKTLDLSYNQLTGDIPRSIGTIPGLSNVILSHNRISGSVPPFLSETLT RLELKHNELSGSISPTSLPPSLQYLSLSWNRLSGPVDLLLIRLDRLNYLDLSVNQFSGCIPSRIFTFPITNLQLQRNSFSGPVQPGGEVAIPTVDLSYNR LSGGVSPMFSTVQNLYLNNNRFIGQVPGSFVDRLMDASIQVLYLQHNYLTGMQINPTVEIPLSSSLCLQYNCMVPPIQTPCPLKAGKQRTRPTAQCNEWR G

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03440			Leucine-rich repeat (LRR) fami...		Potri.014G136100 [exp]	0	1
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.008G146100 [exp]	2.00	0.8875
AT5G55360			MBOAT (membrane bound O-acyl t...		Potri.006G009600 [exp]	9.79	0.8172
AT5G37660		PDLP7	plasmodesmata-located protein ...		Potri.017G130800 [exp]	9.94	0.8357
AT3G16070			unknown protein		Potri.001G182500 [exp]	11.31	0.8345
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Potri.006G086100 [exp]	12.68	0.8218	EXPA3.1,PtEXPA16
AT1G54200			unknown protein		Potri.018G049900 [exp]	14.69	0.7496
AT1G29730			Leucine-rich repeat transmembr...		Potri.010G155000 [exp]	15.03	0.8393
AT4G33670			NAD(P)-linked oxidoreductase s...		Potri.009G081300 [exp]	18.16	0.7683
AT1G79720			Eukaryotic aspartyl protease f...		Potri.001G041700 [exp]	20.71	0.7660
AT3G18050			unknown protein		Potri.015G040900 [exp]	20.83	0.7992

Compare expression of checked genes

Potri.014G136100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.