Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35960 555 / 0 Protein kinase family protein (.1) AT5G18910 462 / 2e-160 Protein kinase superfamily protein (.1) AT3G05140 449 / 6e-156 RBK2 ROP binding protein kinases 2 (.1) AT5G65530 388 / 4e-132 Protein kinase superfamily protein (.1) AT5G10520 368 / 4e-124 RBK1 ROP binding protein kinases 1 (.1) AT2G18890 345 / 3e-116 Protein kinase superfamily protein (.1.2) AT5G57670 331 / 2e-108 Protein kinase superfamily protein (.2) AT1G21590 264 / 5e-81 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G77280 254 / 5e-77 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G24540 241 / 2e-74 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028100 [exp] 462 / 5e-161 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.010G027301 [exp] 454 / 5e-157 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.007G011700 [exp] 384 / 1e-130 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.018G096100 [exp] 345 / 2e-113 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G173700 [exp] 342 / 3e-112 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G091200 [exp] 333 / 1e-111 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.006G166600 [exp] 331 / 7e-111 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.008G197800 [exp] 286 / 1e-92 AT5G18910 348 / 2e-115 Protein kinase superfamily protein (.1) Potri.002G077900 [exp] 268 / 2e-82 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008192 [exp] 532 / 0 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10012776 [exp] 457 / 8e-157 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10034000 [exp] 454 / 5e-155 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10018959 [exp] 444 / 8e-154 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10035949 [exp] 373 / 1e-125 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10012727 [exp] 344 / 3e-113 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10006957 [exp] 326 / 1e-109 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10019990 [exp] 333 / 8e-109 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2) Lus10025713 [exp] 318 / 3e-105 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1) Lus10000968 [exp] 260 / 2e-79 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.014G136300.1 pacid=42763665 polypeptide=Potri.014G136300.1.p locus=Potri.014G136300 ID=Potri.014G136300.1.v4.1 annot-version=v4.1 ATGGAGAAAAAGGAGGATGCTAGCTCTCCGGTTGGAGTTCTTGAAGACTACTTTAAGAGTGAAGACTCAGAGAGTTGTTCTTCAAAAGATCCCTCATCGG ATGCTGAGGTTTCAAAACATGCCTCCCGTTGGCATGGATTTGTCAAGTTACTTAGAAGTAGATCGAAGAAATCTTTAGCAACATTGCATCCTCTCGGTGT CCTAAAGCTCTCTATGAGAAAGAGCAGTAGCATGAGAGAAAACATTATAACGAATCTCTTTGCGAATTCTGATTCGAGCAATTTTAAGTCTCCAAGGATC AACTTCACTCTCTCTGAGCTCCAAGCCGCGACAAACAATTTCAGCCAAGAGAACCTGATTGGAAAAGGCGGTTATGCTGAAGTTTACAAAGGGTGTTTGC AAAATGGGAAAATTGTTGCCATCAAGCGTTTAACACGAGGAACAACTGATGAGATTATTGGGGACTTTTTATCTGAGATGGGGATTATGGCCCATGTGAA CCATCCCAATACAGCTAAATTGATTGGTTATGGAATTGAAGGAGGAATGCACCTTGTTCTTGAATTGTCTCCACATGGGAGCTTAGCTTCAGTTCTTTAT GGTTCAAAAGAGAGATTGACATGGCATATCAGGTATAAGATTGCATTAGGGACAGCTCATGGTTTACTCTATCTTCACGAGGGTTGCCAGAGAAGAATAA TACACAGAGATATTAAGGCTGCAAACATTTTGCTTACAGAGGACTTTGAGCCTCAGATTTGTGATTTTGGTCTTGCAAAGTGGCTACCAGAGCATTGGAC TCACCACACTGTTTCCAAATTTGAAGGCACATTCGGTTATCTTGCTCCGGAATACTTGATGCATGGAATAGTAGACGAAAAAACTGATGTTTTTGCCTTC GGTGTGCTGCTGTTGGAACTAGTCACGGGACGGCGAGCTCTGGATTACTCGCAGCAAAGCCTTGTGTTGTGGGCAAAACCATTACTCAAGAACAATGAGA TTGGAGAGCTAGTTGATCCTGCTCTTGTTGATGATTATAATGCTCGACAAATGAATCTTGTGCTCTTGGCTGCTTCTTTATGCATACAACAATCTTCAAT ACGGCGGCCTCACATGATTCAGGTTGTCCAGATTCTGAATGGTAACCTTAGCTGCTTGAAGTGTATGAAAAAAATCCGATTGCCATTTTTTCGAAAAGCT TTTCTTAATGAAAAACTCCTTGGTGCAGAGGAGTACAACTCACCCAAGAACAGGCATATCAATTGA
AA sequence Show only first row Show all	>Potri.014G136300.1 pacid=42763665 polypeptide=Potri.014G136300.1.p locus=Potri.014G136300 ID=Potri.014G136300.1.v4.1 annot-version=v4.1 MEKKEDASSPVGVLEDYFKSEDSESCSSKDPSSDAEVSKHASRWHGFVKLLRSRSKKSLATLHPLGVLKLSMRKSSSMRENIITNLFANSDSSNFKSPRI NFTLSELQAATNNFSQENLIGKGGYAEVYKGCLQNGKIVAIKRLTRGTTDEIIGDFLSEMGIMAHVNHPNTAKLIGYGIEGGMHLVLELSPHGSLASVLY GSKERLTWHIRYKIALGTAHGLLYLHEGCQRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPEHWTHHTVSKFEGTFGYLAPEYLMHGIVDEKTDVFAF GVLLLELVTGRRALDYSQQSLVLWAKPLLKNNEIGELVDPALVDDYNARQMNLVLLAASLCIQQSSIRRPHMIQVVQILNGNLSCLKCMKKIRLPFFRKA FLNEKLLGAEEYNSPKNRHIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35960			Protein kinase family protein ...		Potri.014G136300 [exp]	0	1
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.001G055100 [exp]	1.41	0.9509
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Potri.015G124800 [exp]	1.73	0.9252
AT3G13275			unknown protein		Potri.011G166250 [exp]	2.44	0.9275
AT2G46690			SAUR-like auxin-responsive pro...		Potri.015G006800 [exp]	2.82	0.9194
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Potri.005G044900 [exp]	4.12	0.9022
AT1G15260			unknown protein		Potri.018G080001 [exp]	4.35	0.9004
AT5G62500		ATEB1B	end binding protein 1B (.1)		Potri.015G062900 [exp]	4.47	0.9237	ATEB1.4
AT5G13500			unknown protein		Potri.001G028100 [exp]	4.47	0.9241
AT1G79420			Protein of unknown function (D...		Potri.010G174200 [exp]	6.48	0.9232
					Potri.005G078900 [exp]	8.36	0.9156

Compare expression of checked genes

Potri.014G136300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.