Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48010 792 / 0 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G11050 350 / 8e-112 Protein kinase superfamily protein (.1) AT1G60800 262 / 2e-78 NIK3 NSP-interacting kinase 3 (.1) AT1G01540 254 / 8e-77 Protein kinase superfamily protein (.1.2) AT4G34440 259 / 9e-77 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT3G24540 254 / 9e-77 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT3G24550 258 / 1e-76 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G18810 257 / 7e-76 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT1G56120 263 / 1e-75 Leucine-rich repeat transmembrane protein kinase (.1) AT5G18500 251 / 1e-75 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136400 [exp] 1270 / 0 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 635 / 0 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 549 / 0 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.017G132800 [exp] 362 / 5e-116 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 357 / 6e-114 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 356 / 1e-113 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 336 / 2e-106 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.003G032100 [exp] 269 / 7e-84 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 268 / 1e-83 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042678 [exp] 831 / 0 AT2G48010 781 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008187 [exp] 709 / 0 AT2G48010 660 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042679 [exp] 707 / 0 AT2G48010 678 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10029626 [exp] 704 / 0 AT2G48010 672 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027970 [exp] 698 / 0 AT2G48010 653 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008186 [exp] 697 / 0 AT2G48010 647 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027971 [exp] 692 / 0 AT2G48010 646 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027972 [exp] 628 / 0 AT2G48010 601 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10028549 [exp] 320 / 7e-104 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10018855 [exp] 318 / 9e-102 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.014G136466.1 pacid=42762980 polypeptide=Potri.014G136466.1.p locus=Potri.014G136466 ID=Potri.014G136466.1.v4.1 annot-version=v4.1 ATGTTCAATCTCCTTCTCCTCACCATCACAACATTCCTCATCACTCTATCCCTCGTTCAATCTCAAGCTCAAAACAACACAGCACCATGCCCGTTAGACT TCGACGTGCTCCAAAACCTGATATCTGCCGGCTCCAATCGCATCCCCACTTCAGACATCAACCAGCAGTGTCAGTACATCCGTCAAGGACTTCGACTTGT TCAATCCCATTACCTCCAGATTAACAACTCCTTCCTGCCTCCACTCGACTCTGCTGAATCATGCTGGAGCACTTACCAAGTCCTCATCGATGGATTCCTT CCCAATTTCGATATCCGCTCTTCTTGCGGCTTCAACACTAGCTGGATCTCCCAGGGCTGTATGAACATCTCTACCAGGTCCCAGTTCGAGGCCATCGTCC CTGTCTCTGCTCTTAATGATGTTGCTTCCAACTGTAACCAGTCCCTTCAGAATAATTCTCCGTGCGCTGCCTGTACTACCAGCTTGTCCACGCTGCAAGC CAGGTACTTGACGGGATCTTCCATCGGGAATGTTTCGGATTGCCAGGCATATCCCTCCATTTATGCCGCGGCTTTTACTAATAGGTATGGACCTACTGAT AAGGGCACAGCCAAGTGTTTGTTTTTCCTTGATTTTAGTTCCAAGAAATCTAGCAAGAAAAGGAGCATAGTCTTGATCTTGGGTGTTTTATTAGGGGGTG GTGTTGGGTTGGTGGTATTGATTGGTTTGTGCTGGATCTTTCACAAGAGGAAAAAGAGGGCTGACAAATTTGGGAGAGTACTTGAGACAGAGTTGGGTTC TGGGTTGGAGTCCATTAGTCAAAGTACTTCTTTGGTTAAATATACATTTGACGAGATTAGGAAGGCAACTAGAAATTTTTCTAGAGATAACATTATCGGG AGAGGAGGTTACGGGAATGTGTATAAAGGTGAATTGCCAGATGGTTCTCTAGTTGCTTTTAAAAGATTCAAGAATTGCTCGGCTGCAGGTGATTCTTCTT TTGCTCATGAAGTTGAGGTTATTGCGAGTGTCAGGCATGTCAATCTTGTTGCTTTGAGAGGATATTGTACTGCTACTAGTCCTTTTGAGGGTCACCAGAG GATAATCGTGTGTGATTTGATAAAGAATGGCACTTTGCATGACCATTTATTCGGGTCCTGTGCGGAAAAGCTTAGCTGGCCTATTCGGCAAAAGATTGCT TTAGGGACTGCTAGGGGATTGGCTTATTTGCACTATGGGGCTCAGCCGTCAATTATTCATAGGGATATTAAAGCTAGTAATATACTTCTGGATGAGAGTT TTGAGCCCAAGGTTGCGGACTTTGGGCTAGCAAAGTTTACCCCAGAAGGAATGACACATTTGAGCACCAGGGTAGCTGGGACTATGGGATATGTTGCTCC TGAGTATGCTTTGTATGGGCAATTAACAGAGAGAAGCGACGTGTTTAGCTTTGGTGTCGTGCTTCTCGAGCTTTTGAGTGGGAAGAAGGCACTTATGGTG GATCATGAGGGACAGCCATCTATTGTGACTGATTGGGCATGGTCATTAGTGAGAGAAGGGAGAACTTTAGATGTTATCGAAGATGGCATGCCGGAATCAG GGTCACAAGAAATTTTGGAAAAGTATGTTCTGGTGGCAGTTCTTTGTTCTCATCCACAGTTATATGCTAGGCCAACAATGGATCAAGTCGTGAAAATGTT GGAAACAGATCTCTCAATTCCTTCCATTCCAGAAAGGTCAATTTCTCTTGTAGCTGAGATGGATGATATTGAGAGAACTGCGAGCAGAAGCGCCTCTGGT CAGCTCTCTAGTCCAGCTGGCTACCAGCATTTCACATTCGAGAATGATAGCCCTTCTATCCGCAAGGAAGAAGGGTCAAGTTTTTCTCTTGTAGCTGAGA TGGATGAAATTGAGAGAACTGCTAGCAGAAGCGCCTCTGGTCAGCTCTCTAGTCCAGCTGGCTATCAGCATTTCACATTCGAGAATGATCGCCCTTCTAT CCGCAAGGAAGAAGGGTCAAGTTCAGACTCTAGAGCAATAGAATAG
AA sequence Show only first row Show all	>Potri.014G136466.1 pacid=42762980 polypeptide=Potri.014G136466.1.p locus=Potri.014G136466 ID=Potri.014G136466.1.v4.1 annot-version=v4.1 MFNLLLLTITTFLITLSLVQSQAQNNTAPCPLDFDVLQNLISAGSNRIPTSDINQQCQYIRQGLRLVQSHYLQINNSFLPPLDSAESCWSTYQVLIDGFL PNFDIRSSCGFNTSWISQGCMNISTRSQFEAIVPVSALNDVASNCNQSLQNNSPCAACTTSLSTLQARYLTGSSIGNVSDCQAYPSIYAAAFTNRYGPTD KGTAKCLFFLDFSSKKSSKKRSIVLILGVLLGGGVGLVVLIGLCWIFHKRKKRADKFGRVLETELGSGLESISQSTSLVKYTFDEIRKATRNFSRDNIIG RGGYGNVYKGELPDGSLVAFKRFKNCSAAGDSSFAHEVEVIASVRHVNLVALRGYCTATSPFEGHQRIIVCDLIKNGTLHDHLFGSCAEKLSWPIRQKIA LGTARGLAYLHYGAQPSIIHRDIKASNILLDESFEPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKKALMV DHEGQPSIVTDWAWSLVREGRTLDVIEDGMPESGSQEILEKYVLVAVLCSHPQLYARPTMDQVVKMLETDLSIPSIPERSISLVAEMDDIERTASRSASG QLSSPAGYQHFTFENDSPSIRKEEGSSFSLVAEMDEIERTASRSASGQLSSPAGYQHFTFENDRPSIRKEEGSSSDSRAIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.014G136466 [exp]	0	1
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.014G136400 [exp]	1.00	0.9706
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.005G075100 [exp]	1.41	0.9349
AT5G36930			Disease resistance protein (TI...		Potri.019G007884 [exp]	3.00	0.9087
AT2G46080			unknown protein		Potri.008G085600 [exp]	5.47	0.8984
AT2G27480			Calcium-binding EF-hand family...		Potri.009G163600 [exp]	6.00	0.8662
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.012G145800 [exp]	6.32	0.8778
AT5G42440			Protein kinase superfamily pro...		Potri.002G065400 [exp]	7.74	0.9003
AT4G11140	AP2_ERF	CRF1	cytokinin response factor 1 (....		Potri.003G136300 [exp]	8.24	0.8289	ERF88
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241800 [exp]	8.48	0.8865
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Potri.002G203500 [exp]	9.89	0.8710

Compare expression of checked genes

Potri.014G136466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.