Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48020 664 / 0 Major facilitator superfamily protein (.1.2) AT5G18840 548 / 0 Major facilitator superfamily protein (.1) AT3G05150 534 / 0 Major facilitator superfamily protein (.1) AT1G54730 508 / 3e-178 Major facilitator superfamily protein (.1.2.3) AT1G08930 421 / 6e-144 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT1G08920 419 / 3e-143 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT1G75220 412 / 3e-140 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT1G19450 408 / 6e-139 Major facilitator superfamily protein (.1) AT5G27350 407 / 1e-138 SFP1 Major facilitator superfamily protein (.1) AT5G27360 405 / 8e-138 SFP2 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212900 [exp] 735 / 0 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 564 / 0 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 522 / 0 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 454 / 6e-157 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 440 / 2e-151 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G037000 [exp] 433 / 1e-148 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G040000 [exp] 427 / 1e-146 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.013G027800 [exp] 416 / 3e-142 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 399 / 4e-135 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008183 [exp] 657 / 0 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029629 [exp] 637 / 0 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 632 / 0 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 609 / 0 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008182 [exp] 600 / 0 AT2G48020 613 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008184 [exp] 590 / 0 AT2G48020 593 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027976 [exp] 577 / 0 AT2G48020 598 / 0.0 Major facilitator superfamily protein (.1.2) Lus10042676 [exp] 565 / 0 AT2G48020 603 / 0.0 Major facilitator superfamily protein (.1.2) Lus10012780 [exp] 553 / 0 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10035354 [exp] 509 / 2e-178 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.014G136600.1 pacid=42763785 polypeptide=Potri.014G136600.1.p locus=Potri.014G136600 ID=Potri.014G136600.1.v4.1 annot-version=v4.1 ATGGAGAATGATCACGATGGTGCGCTCGAAGATGCAAGAGAACCACTCATGCCCAATAATTCATCTTGCGAAGAAGGATCTGGCTCTCAGTGTAGCAGCA ACAATACTGGTACTGCTTGGATGGTTTACCTCAGCACATTTGTTGCAGTTGCTGGTTCTTTTGAAGTTGGATCCTGTTCTGGCTATTCATCACCAACTCA GAATGCTATAAGGGAAGATCTGTCTTTGTCTATAGCAGAGTATTCCTTGTTTGGTTCCATATTGACAGTTGGTGCAATGATCGGTGCAATCACAAGCGGA CCAATTGCTGATTATATTGGTCGAAAAGGGGCGATGAGATTTTCTAGCACCTCCTGTGCTGCAGGATGGCTTGCCATTTACTTTGCTAAGGGCGCTCTGG CATTGGACATTGGGAGATTGGCAACTGGTTATGGAATGGGAGCGTTGTCCTTCGTGGTACCTGTTTTTATAGCTGAAATTGCACCCAAAAACCTTAGAGG AACATTAACAGCTGTGACTCAGCTTATGGTTGCTACTGGAGTGTCTGTTGCATTCATAATAGGGACAGTACTGAGATGGAGGGTTTTGGCTTTGACTGGA CTTATCCCTTGTGTAATTCTGCATGTTGGCCTATTTCTCATTCCAGAGTCTCCCAGATGGCTGGCAAAGAGGGGGCGTGAAAAAGAGTTTGAAACCACAT TACAGAAACTTCGTGGCAGGGCTGCTGATATATCTTACGAGGCAATTGAAATCAAGGATTATATAGAAACTCTCGAACGCCTCCCAAAAGCCAAACTGCT AGACCTATTCCAAAGAAGAAACCTGCACTCAGTCCTTATAGGAGTTGGATTGATGGTTTTGCAACAATTTGGAGGAATCAATGCGGTTTGCTTTTATGTC AGCTCTATCTTTGAAGTAGCAGGATTTTCTCCGTCTGTTGGAACCATAATCTACGCCATCCTTCAGGTTGTGGTTGTTGCCCTAAACACAACCATTATAG ATAAAGTTGGAAGAAAACCTCTTTTACTGGTTTCTGCATCAGGACTGGTCATCGCCTGCCTAATAACAGGGCTTTCATTCTATCTGAAGGTTCATGAATT AGCACTCAAGTCAGCTCCCATGCTCGCTGTAACTGGCATATTGCTATATATAGGAACATTTTCGGCAGGAATGGGTCCAATTCCTTGGGTTATAATGTCA GAGATATTCCCTTTGAATATCAAAGGAGTTTCTGGAAGCCTAGCAACACTAGTGAACTGGTTCTGTGCATGGGCAGTTTCCTTCACCTTCAACTTCCTTA TGTCCTGGAGCTCCTATGGTACATTTATTCTTTATGCTGCGATCAATGCGATGACCATAGCGTTTGTGGCATTGCTGGTGCCAGAAACAAAAGGAAGAAC CTTGGAACAAATTCAAGCAGCCATACGTTGA
AA sequence Show only first row Show all	>Potri.014G136600.1 pacid=42763785 polypeptide=Potri.014G136600.1.p locus=Potri.014G136600 ID=Potri.014G136600.1.v4.1 annot-version=v4.1 MENDHDGALEDAREPLMPNNSSCEEGSGSQCSSNNTGTAWMVYLSTFVAVAGSFEVGSCSGYSSPTQNAIREDLSLSIAEYSLFGSILTVGAMIGAITSG PIADYIGRKGAMRFSSTSCAAGWLAIYFAKGALALDIGRLATGYGMGALSFVVPVFIAEIAPKNLRGTLTAVTQLMVATGVSVAFIIGTVLRWRVLALTG LIPCVILHVGLFLIPESPRWLAKRGREKEFETTLQKLRGRAADISYEAIEIKDYIETLERLPKAKLLDLFQRRNLHSVLIGVGLMVLQQFGGINAVCFYV SSIFEVAGFSPSVGTIIYAILQVVVVALNTTIIDKVGRKPLLLVSASGLVIACLITGLSFYLKVHELALKSAPMLAVTGILLYIGTFSAGMGPIPWVIMS EIFPLNIKGVSGSLATLVNWFCAWAVSFTFNFLMSWSSYGTFILYAAINAMTIAFVALLVPETKGRTLEQIQAAIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G48020			Major facilitator superfamily ...		Potri.014G136600 [exp]	0	1
AT3G14225		GLIP4, EMB1474	GDSL-motif lipase 4 (.1)		Potri.007G133500 [exp]	3.16	0.8987
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Potri.009G005400 [exp]	3.87	0.9192
AT2G28080			UDP-Glycosyltransferase superf...		Potri.004G214100 [exp]	5.00	0.8511
AT5G10610		CYP81K1	"cytochrome P450, family 81, s...		Potri.017G028100 [exp]	7.74	0.8893
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028150 [exp]	8.77	0.8821
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Potri.004G086500 [exp]	11.40	0.9088
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028200 [exp]	11.61	0.8734	CYP81R2v2,IFS1.55
					Potri.010G149600 [exp]	12.72	0.8299
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.002G207050 [exp]	13.41	0.8353
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.011G066900 [exp]	13.63	0.9015

Compare expression of checked genes

Potri.014G136600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.