Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23160 307 / 6e-97 Auxin-responsive GH3 family protein (.1) AT5G13320 301 / 1e-94 WIN3, GDG1, PBS3, GH3.12 HOPW1-1-INTERACTING 3, AVRPPHB SUSCEPTIBLE 3, GRETCHEN HAGEN 3.12, GH3-LIKE DEFENSE GENE 1, Auxin-responsive GH3 family protein (.1) AT1G59500 301 / 2e-94 GH3.4 Auxin-responsive GH3 family protein (.1) AT4G37390 299 / 2e-93 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT1G28130 297 / 1e-92 GH3.17 Auxin-responsive GH3 family protein (.1.2) AT4G03400 292 / 4e-91 GH3-10, DFL2 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) AT2G23170 292 / 4e-91 GH3.3 Auxin-responsive GH3 family protein (.1) AT2G14960 285 / 2e-88 GH3.1 Auxin-responsive GH3 family protein (.1) AT5G51470 283 / 1e-87 Auxin-responsive GH3 family protein (.1) AT2G46370 279 / 2e-86 FIN219, JAR1 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103500 [exp] 308 / 3e-97 AT4G03400 897 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Potri.013G144300 [exp] 305 / 4e-96 AT4G03400 852 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Potri.002G168200 [exp] 296 / 5e-93 AT2G46370 788 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Potri.014G095500 [exp] 293 / 1e-91 AT2G46370 790 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Potri.009G092900 [exp] 293 / 2e-91 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G298300 [exp] 290 / 2e-90 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G069000 [exp] 287 / 5e-89 AT1G28130 901 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.011G129700 [exp] 283 / 2e-87 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.001G410400 [exp] 278 / 1e-85 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005151 [exp] 298 / 1e-93 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10003039 [exp] 294 / 5e-92 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10014804 [exp] 279 / 8e-86 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10003598 [exp] 278 / 3e-85 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 274 / 5e-84 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10026600 [exp] 273 / 9e-84 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 271 / 1e-82 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10010391 [exp] 267 / 2e-81 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10039723 [exp] 266 / 7e-81 AT5G54510 855 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10039797 [exp] 259 / 6e-78 AT4G03400 769 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF03321 [poplar] [flax] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Potri.014G136800.2 pacid=42762651 polypeptide=Potri.014G136800.2.p locus=Potri.014G136800 ID=Potri.014G136800.2.v4.1 annot-version=v4.1 ATGATGACATACGATGAACTTGATCGGAACCTTGAGGACTTGACCAAGAACGCCGCACATCACCAGCTCCAGACCCTCCACTCCATCCTCCAACACCAAG CTAGCGTTGGCTATCTTCAGCCTTACCTCTCTGCCTGTCATGCCCCCGTCGATGCCGCTACTTTTCGAAGCCAGGTCCCTTTGTCTTCCTACGATGACTA TTTTCATCTCATCAATCAATTGGCCAATGGAGACATTGATCACCACCAGCCCCTCCTCTCCGCTGATCCTCTCCTTTGTTTCTTCTACAGCTCTGGCACT AGTACAATGAAGCCCAAATTGATCCCTTACTTTGATTCAGCTCTATCAAAAGCTGCCTCATATAATGCTCATCAAGGCAGCGCTGCGATTTTTCGAAATT TAGTTCCACCACGACCTGAAGTGAATAAAATCCTTTGGTTTCTATACGCGGATGATGCTCCAACTACAAGAGGTGGATTCAAGGTTATGGCTGCCTCTAC ATACCCTTTGCAAGGGAATAAGAGTAGAAGCAATTGGTCTCAAACTCTTTCTTGTATTAGTCCTCGTGAGGTTGTTTTTGGTTCAAATATTAAGCAACAA ATGTATTGCCATCTGCTCTGTGCACTTAGGAGCTTTGATATAATTGATGGGATTCGTGCTGCGTATGCGGCAGGCTTGATTAGAGCATTTTCACTGCTGG AATCCAAGTGGGAGAAACTCTGTGATGATCTCGAAAGTGGGTTTCCTAGTTTGGAAATTGGTGACGCGGCAATGAAGGAATCTGTTGTTGAATTTCTTGG TGGACCTCAAGTGGATTTGTCGAGGAGAATTCGAGAAATTTGTGCAGAAAGCAATTGGGGTGGGATTCTGTCTAAATTATGGCCTAATGTTCGCTATGTT AAGTCTGTTACAACTGGAAGCATGAAGCAGTATTATTCCAAACTCAAGTACTACGCGGGAGATGTAATGATTTTAGGTGGAGATTATTTTGCATCAGAAT GTTGCCTGGGTATTAACTTGGATATCCAGCAACCTCCAGAGTCAACCCGATTTGTTATGCTTCCAACCACAGCCTATTTTGAATTTCTCCCCTTTGATTT GAATGAGAGCAGTGTTGTTGGTGAAGAAACTGTGGATTTTTCAGGTGTCAAGGTAGGGAAGATGTATGAGGTGGCTGTGACCACTTACAGAGGATTGTAT CGATACCGTTTGGGTGACATTGTGAGAGTTGTTGGTTTTCATAATTCATCTCCGCTAGTAGAGTTCGTGATGAGAGCTCCTAAAACTGGTTACGAGATAA TAACTGAGAAAGACTTGATGTCTGCTATGGAGAGTTTTCAGCATTCGATGGCAGCAGAAGTTGTGGAGTTCGCAAGTTTCTCAGATTTTGAGTTGAGTCC AAAGCGGTTGAAGGTTTTCATAGAATTTAGAGAGGGATGTGATTTTCTACAGGAGGAGAAGTTGCAGGGATCAGTTGAAGCTCTGCAGAGGTGCTGTTCC TCTCTTGAGAATGGTTTGGGAGAAATTTACAAGGTGCAAAAGGATAGGGGAGAGATAGGCCCTTTGTTGGTATCTGTTGTAAGGTCTGGTAGCTTTGATG GGATATTACAAATGGCCATCAAGAATGGGGCACCAGCTGGTCAATATAAACCACCAAAAATCATTAGGAATCGTGAAATTGTTGGTTTTATGGAAGAATC TGCTGTTCTGACTATAAGCCTGGATTCATTTCATGGATAA
AA sequence Show only first row Show all	>Potri.014G136800.2 pacid=42762651 polypeptide=Potri.014G136800.2.p locus=Potri.014G136800 ID=Potri.014G136800.2.v4.1 annot-version=v4.1 MMTYDELDRNLEDLTKNAAHHQLQTLHSILQHQASVGYLQPYLSACHAPVDAATFRSQVPLSSYDDYFHLINQLANGDIDHHQPLLSADPLLCFFYSSGT STMKPKLIPYFDSALSKAASYNAHQGSAAIFRNLVPPRPEVNKILWFLYADDAPTTRGGFKVMAASTYPLQGNKSRSNWSQTLSCISPREVVFGSNIKQQ MYCHLLCALRSFDIIDGIRAAYAAGLIRAFSLLESKWEKLCDDLESGFPSLEIGDAAMKESVVEFLGGPQVDLSRRIREICAESNWGGILSKLWPNVRYV KSVTTGSMKQYYSKLKYYAGDVMILGGDYFASECCLGINLDIQQPPESTRFVMLPTTAYFEFLPFDLNESSVVGEETVDFSGVKVGKMYEVAVTTYRGLY RYRLGDIVRVVGFHNSSPLVEFVMRAPKTGYEIITEKDLMSAMESFQHSMAAEVVEFASFSDFELSPKRLKVFIEFREGCDFLQEEKLQGSVEALQRCCS SLENGLGEIYKVQKDRGEIGPLLVSVVRSGSFDGILQMAIKNGAPAGQYKPPKIIRNREIVGFMEESAVLTISLDSFHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23160			Auxin-responsive GH3 family pr...		Potri.014G136800 [exp]	0	1
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.001G248700 [exp]	1.00	0.8768
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.005G040200 [exp]	4.47	0.8015
AT2G17760			Eukaryotic aspartyl protease f...		Potri.005G108700 [exp]	6.00	0.7970
AT1G73640		AtRABA6a	RAB GTPase homolog A6A (.1)		Potri.015G039700 [exp]	6.00	0.7742
					Potri.019G129600 [exp]	8.00	0.7156
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.007G093900 [exp]	8.06	0.7647
AT2G31945			unknown protein		Potri.003G215300 [exp]	13.07	0.7411
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Potri.002G132900 [exp]	15.68	0.7564
					Potri.019G129200 [exp]	19.44	0.7145
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.017G013700 [exp]	22.13	0.6691	ERF46

Compare expression of checked genes

Potri.014G136800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.