Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65410 483 / 2e-172 ABCI13, TGD3, ATNAP11 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) AT1G67940 103 / 2e-25 ABCI17, AtSTAR1, ATNAP3 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) AT1G27940 104 / 3e-24 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT3G62150 102 / 2e-23 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT1G28010 100 / 4e-23 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT2G47000 97 / 1e-21 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT5G46540 96 / 2e-21 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT1G02530 95 / 5e-21 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT3G13220 93 / 1e-20 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT1G71960 93 / 2e-20 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212701 [exp] 597 / 0 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.018G132000 [exp] 108 / 4e-27 AT1G67940 390 / 3e-138 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Potri.011G133800 [exp] 100 / 6e-23 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G354900 [exp] 95 / 4e-21 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.009G051300 [exp] 94 / 5e-21 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G417600 [exp] 94 / 6e-21 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.012G069700 [exp] 94 / 7e-21 AT3G47780 1139 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.015G063400 [exp] 93 / 1e-20 AT3G47780 1145 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.018G141300 [exp] 92 / 5e-20 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020188 [exp] 522 / 0 AT1G65410 500 / 2e-179 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Lus10026992 [exp] 498 / 5e-178 AT1G65410 476 / 2e-169 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Lus10035453 [exp] 109 / 2e-27 AT1G67940 371 / 1e-130 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Lus10036616 [exp] 96 / 7e-22 AT3G28345 479 / 6e-159 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10043069 [exp] 97 / 8e-22 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10035834 [exp] 96 / 2e-21 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10004583 [exp] 95 / 6e-21 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Lus10038049 [exp] 94 / 1e-20 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10009988 [exp] 94 / 1e-20 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10017270 [exp] 93 / 2e-20 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.014G137000.1 pacid=42762877 polypeptide=Potri.014G137000.1.p locus=Potri.014G137000 ID=Potri.014G137000.1.v4.1 annot-version=v4.1 ATGCGCTTGGTCTCATCTGGCTCAATGCTATTATCTCCGCTTTGTCTGCCAAATTGGTATGCTCCCTCCACTGGGATACCATTCAACAATTCACTTTGTT TAATGCCGAGGAAGGATCAAAGAAATATTGTTTGTGCCTGTGTGGCTCCTCCTCGACCCAACATAGGGAGGGAGGGATTTTCCGCAAACAAATTCACTGA TTCATATAAACCAGAGAAATTAAGCAGGATAGGTGAACCGGAGGAGGATGATTCTGATGTTCTCATCGAATGCAGAAATGTTTACAAGTCATTTGGGGAG AAGCATATATTAAGAGGTGTGAGCTTCAAGATCAGACACGGTGAAGCAGTTGGAATAATCGGACCTTCTGGCACTGGTAAATCTACAATTTTGAAGATTA TTGCAGGACTTCTTGCTCCGGACAGGGGTGAGGTTTATATTCGAGGTAAAAAGAGAGATGGTTTGATCAGCGATGAGGTGATGTCTGGGCTTCGAATTGG ATTGGTGTTTCAAAGTGCAGCACTTTTTGATTCTTTGACTGTGCGTGAAAATGTTGGTTTCCTTTTATACGAAAATTCTAGCATGTCGGAAGAGCAAATC ATGGATCTTGTGGCAGAAACTTTGGCTGCAGTTGGTTTAAAGGGAGTAGAGGACCGGCTACCTTCTGAATTATCTGGTGGAATGAAGAAAAGAGTTGCTC TAGCTCGGTCTATAATTTTTGATACCACAAAGGAAACAATTGAACCAGAGGTACTCTTATATGATGAACCAACAGCTGGACTTGATCCAATAGCATCTAC TGTAGTTGAAGATCTCATCCGCCATGTTCATATGAAAGGTGAGGATGCACGGAAACCTGGGAAGATCGCGTCTTATGTGGTGGTTACTCATCAACATAGT ACCATTAGAAGGGCTGTTGACAGGTTGTTGTTTCTACATGAAGGAAAGGTTGTTTGGCAAGGAATTACTCAAGAATTCATGACATCAACCAAACCAATTG TTCAACAGTTTGCATCTGGCAGCCTTGATGGGCCTATTAAATATTAG
AA sequence Show only first row Show all	>Potri.014G137000.1 pacid=42762877 polypeptide=Potri.014G137000.1.p locus=Potri.014G137000 ID=Potri.014G137000.1.v4.1 annot-version=v4.1 MRLVSSGSMLLSPLCLPNWYAPSTGIPFNNSLCLMPRKDQRNIVCACVAPPRPNIGREGFSANKFTDSYKPEKLSRIGEPEEDDSDVLIECRNVYKSFGE KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGKKRDGLISDEVMSGLRIGLVFQSAALFDSLTVRENVGFLLYENSSMSEEQI MDLVAETLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDTTKETIEPEVLLYDEPTAGLDPIASTVVEDLIRHVHMKGEDARKPGKIASYVVVTHQHS TIRRAVDRLLFLHEGKVVWQGITQEFMTSTKPIVQQFASGSLDGPIKY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Potri.014G137000 [exp]	0	1
AT1G23110			unknown protein		Potri.010G111300 [exp]	8.06	0.8198
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.017G141300 [exp]	9.79	0.8573
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Potri.017G050500 [exp]	12.56	0.8702
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Potri.015G136700 [exp]	13.22	0.8817	Pt-NAP8.1
AT5G19540			unknown protein		Potri.018G080900 [exp]	13.41	0.8596
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G017100 [exp]	20.00	0.8507
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Potri.005G203000 [exp]	21.44	0.8596
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Potri.001G177000 [exp]	21.81	0.8456
AT3G45310			Cysteine proteinases superfami...		Potri.006G141700 [exp]	24.31	0.8654	Pt-ELSA.1
AT5G47860			Protein of unknown function (D...		Potri.001G072400 [exp]	33.82	0.8617

Compare expression of checked genes

Potri.014G137000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.