Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63030 224 / 2e-75 MBD4 methyl-CPG-binding domain 4 (.1) AT4G22745 214 / 2e-71 MBD1 methyl-CPG-binding domain 1 (.1) AT5G35330 124 / 5e-35 MBD2, MBD02, ATMBD2 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) AT4G00416 107 / 8e-30 MBD3 methyl-CPG-binding domain 3 (.1) AT5G35338 92 / 6e-24 MBD12 methyl-CPG-binding domain 12 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212600 [exp] 352 / 7e-126 AT3G63030 221 / 3e-74 methyl-CPG-binding domain 4 (.1) Potri.006G077600 [exp] 122 / 5e-34 AT5G35330 257 / 6e-85 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Potri.018G145500 [exp] 121 / 3e-33 AT5G35330 282 / 2e-94 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Potri.018G146700 [exp] 119 / 1e-32 AT5G35330 286 / 6e-96 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008176 [exp] 248 / 1e-84 AT3G63030 204 / 3e-67 methyl-CPG-binding domain 4 (.1) Lus10027980 [exp] 248 / 1e-84 AT3G63030 206 / 4e-68 methyl-CPG-binding domain 4 (.1) Lus10029631 [exp] 241 / 2e-82 AT3G63030 208 / 1e-69 methyl-CPG-binding domain 4 (.1) Lus10042674 [exp] 238 / 3e-81 AT3G63030 207 / 4e-69 methyl-CPG-binding domain 4 (.1) Lus10017146 [exp] 124 / 1e-34 AT5G35330 283 / 5e-95 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Lus10021593 [exp] 124 / 2e-34 AT5G35330 283 / 1e-94 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF01429 [poplar] [flax] MBD Methyl-CpG binding domain CL0081 [poplar] [flax] PF07496 [poplar] [flax] zf-CW CW-type Zinc Finger
Representative CDS sequence Show only first row Show all	>Potri.014G137100.2 pacid=42764425 polypeptide=Potri.014G137100.2.p locus=Potri.014G137100 ID=Potri.014G137100.2.v4.1 annot-version=v4.1 ATGGCACTGAAAGAGCGTAGTCCCGAAACCCCTAAAACCTCCTCCAAGAATCCACGAGTTGCAGTGCGATCAATTGATACATATGCTGCACAATGCGACA AATGCTTAAAATGGAGGGTGATTGCAACTGAAGAAGAGTATGAGGAGATCAGAAGTAAAATGGAAGAGTCTCCATTTGTTTGTAACAGAAAACCTGGTGT ATCTTGTGATGATCCTGCTGACATTGAGTACAATGCCACTCGAACCTGGGTCATTGATAGGCCTGGCATTCCAAAGACACCAGAAGGTTTTAAAAGGAGC TTGGTTCTTAGACGTGATTTCTCCAAAATGGATGCTTACTATATCACACCCACAGGAAAGAAGCTGAGAACACGTAACGAGATAGCAGCATTTATAGATG CAAATCCAAAATACAAAGATGTAAACCTATCTGACTTCAATTTTACCTCTCCGAAGGTAATGGAAGACACCATCCCAGAAGATGCTGTGAGAAAGGTTTC CTCTAGTGGAAATGGCAACAAAAGGAAGGCATTAAAGGATGCAGCTTAA
AA sequence Show only first row Show all	>Potri.014G137100.2 pacid=42764425 polypeptide=Potri.014G137100.2.p locus=Potri.014G137100 ID=Potri.014G137100.2.v4.1 annot-version=v4.1 MALKERSPETPKTSSKNPRVAVRSIDTYAAQCDKCLKWRVIATEEEYEEIRSKMEESPFVCNRKPGVSCDDPADIEYNATRTWVIDRPGIPKTPEGFKRS LVLRRDFSKMDAYYITPTGKKLRTRNEIAAFIDANPKYKDVNLSDFNFTSPKVMEDTIPEDAVRKVSSSGNGNKRKALKDAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Potri.014G137100 [exp]	0	1
AT1G73820			Ssu72-like family protein (.1)		Potri.015G036600 [exp]	2.00	0.7513
AT3G08890			Protein of unknown function, D...		Potri.016G125300 [exp]	3.16	0.7188
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.003G019300 [exp]	3.31	0.7643
AT3G24315		ATSEC20	Sec20 family protein (.1)		Potri.010G064900 [exp]	3.87	0.7291
AT5G22280			unknown protein		Potri.006G206100 [exp]	6.92	0.6480
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.003G133600 [exp]	7.34	0.6627
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.017G149800 [exp]	10.81	0.6444
AT1G69980			unknown protein		Potri.008G191700 [exp]	15.62	0.7245
AT1G05205			unknown protein		Potri.018G093501 [exp]	25.88	0.6575
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.014G060900 [exp]	31.46	0.5651	Pt-VAP27.5

Compare expression of checked genes

Potri.014G137100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.