Plant FIBer expression Database

Potri.014G137300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G48070 233 / 4e-78 RPH1 resistance to phytophthora 1 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029632
[exp]
233 / 3e-77 AT2G48070 248 / 1e-83 resistance to phytophthora 1 (.1.2.3)
Lus10042673
[exp]
154 / 1e-45 AT4G02980 259 / 1e-86 endoplasmic reticulum auxin binding protein 1 (.1)
PFAM info
Representative CDS sequence
>Potri.014G137300.1 pacid=42764441 polypeptide=Potri.014G137300.1.p locus=Potri.014G137300 ID=Potri.014G137300.1.v4.1 annot-version=v4.1
ATGAACGCTCTCCTCTCAAGCTCAACCTCTCTCTGCAACTCTCACATTTTGAAGCTGACATCCAAACCCACAAGTTTCAGGCTATCATTACCATGCAATA
CCAATACTACCCGGTACTTGGGCTGCGACAGCTTGAGCTTGAGAATACGAGCCAGCAACAATGCAAATGAAGTGGATACGCAGACAGCAAAAGAAGATCA
GGCAACTGAAACAAGCAATCAAGTCTCCAGTTCATCATCTGCTGCCGCACCTGCAATTGACAAAGACCTCAAAAAGGTGGTTCAAAAGACTGCTGCTACC
TTTGCACCAAGAGCTTCCACAGCTACAAAAAATCCTGCTGTACCAGGAACTACCTTGTATACTGTTTTTGAGGTTCAAGGCTACGTCTGCATGTTGTTAG
GTGGAGCTCTTTCTTTCAATCTCATTTTCCCATCAAACGAACCTGACATTTGGAGATTGATGGGAATGTGGTCCATCTGGATGTTCACAATTCCTTCCCT
TCGTGCCCGGGACTGCTCCAAGAATGAGAAAGAGGCTCTTAATTATCTATTTCTACTCGTCCCTTTACTCAATGTTACAATCCCCTTCTTTTGGAAGTCC
TTTGCGTTAGTATGGTCCGCCGATACCATTGCCTTCTTTGGAATGTATGCATGGAAGCTGGGATGGCTCCAGAAAACAGAGTAG
AA sequence
>Potri.014G137300.1 pacid=42764441 polypeptide=Potri.014G137300.1.p locus=Potri.014G137300 ID=Potri.014G137300.1.v4.1 annot-version=v4.1
MNALLSSSTSLCNSHILKLTSKPTSFRLSLPCNTNTTRYLGCDSLSLRIRASNNANEVDTQTAKEDQATETSNQVSSSSSAAAPAIDKDLKKVVQKTAAT
FAPRASTATKNPAVPGTTLYTVFEVQGYVCMLLGGALSFNLIFPSNEPDIWRLMGMWSIWMFTIPSLRARDCSKNEKEALNYLFLLVPLLNVTIPFFWKS
FALVWSADTIAFFGMYAWKLGWLQKTE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G48070 RPH1 resistance to phytophthora 1 (... Potri.014G137300
[exp]
0 1
AT3G25410 Sodium Bile acid symporter fam... Potri.014G178000
[exp]
1.41 0.9866
AT1G02150 Tetratricopeptide repeat (TPR)... Potri.014G050300
[exp]
2.00 0.9862
AT1G64860 SIGB, SIG2, SIG... RNApolymerase sigma subunit 2,... Potri.019G043300
[exp]
2.44 0.9858 RPOD1.1
AT1G02560 NCLPP5, NCLPP1,... NUCLEAR CLPP 5, NUCLEAR-ENCODE... Potri.014G119700
[exp]
4.00 0.9813
AT2G29630 PY, THIC PYRIMIDINE REQUIRING, thiaminC... Potri.009G043200
[exp]
4.00 0.9713
AT5G23240 DNAJ heat shock N-terminal dom... Potri.001G347600
[exp]
4.24 0.9758
AT4G02725 unknown protein Potri.005G210700
[exp]
4.69 0.9737
AT5G26742 EMB1138 embryo defective 1138, DEAD bo... Potri.005G000500
[exp]
4.89 0.9789
AT1G49380 cytochrome c biogenesis protei... Potri.009G111692
[exp]
5.47 0.9738
AT5G46580 pentatricopeptide (PPR) repeat... Potri.003G089600
[exp]
6.70 0.9800

Potri.014G137300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.