Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02940 542 / 0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT2G48080 464 / 9e-161 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT1G14710 224 / 5e-66 hydroxyproline-rich glycoprotein family protein (.1.2) AT2G17970 118 / 2e-28 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT4G36090 117 / 2e-28 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3) AT1G48980 100 / 4e-23 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G210732 [exp] 215 / 1e-67 AT4G02940 123 / 2e-33 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Potri.008G138900 [exp] 160 / 3e-42 AT1G14710 423 / 6e-140 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.010G102100 [exp] 156 / 1e-40 AT1G14710 421 / 3e-139 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.005G114800 [exp] 104 / 9e-24 AT2G17970 504 / 1e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.007G012200 [exp] 96 / 5e-21 AT2G17970 458 / 2e-157 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027990 [exp] 602 / 0 AT4G02940 535 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10008166 [exp] 582 / 0 AT4G02940 511 / 2e-177 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10042669 [exp] 577 / 0 AT4G02940 498 / 5e-172 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10029637 [exp] 568 / 0 AT4G02940 503 / 4e-174 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10041917 [exp] 106 / 2e-24 AT2G17970 549 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10028462 [exp] 105 / 7e-24 AT2G17970 542 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10028670 [exp] 62 / 2e-10 AT2G17970 249 / 5e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G137700.2 pacid=42764324 polypeptide=Potri.014G137700.2.p locus=Potri.014G137700 ID=Potri.014G137700.2.v4.1 annot-version=v4.1 ATGGCGGCAGGAGCAGTATCGCCGACGGATCATCAAGGTACTCCACCAGTGGTGCCGGTGCCGATGATGATGGCGGACACGATTGCCAAGGACGCTATTC TTGCCTGGTTTCGTGGGGAATTCGCAGCGGCTAACGCCATAATCGATGCTCTGTGTAGCCACCTGGCACAGCTGGATGCAGGATCCGAGTACGAGGCGGT GTTCGCGGCCATTCATGGGAGGAGGCTTAACTGGATCCCTGTGCTCCAGATGCAGAAGTACCACTCCATTGCAGACGTGGCTTTGGAGCTAAAGCGAGTG GCTGAGACAAAACTGGAAGCAGCATCATTCGGAAACGTGGAGACTGATAAATTCAGCGATGAGAAAGTAAAAATAAGCGTGGAAAATGGTCATGTTGCTC AGGAAGAGGAGGAGGATTCACCTGATAGTGATATTACTGATTCAGGATCTCAAGAAGTGAAGCCTGCTAGTGAGAATAACGATGACATATGTGCCAATCA TGAAGACTGCGGCTTACGTCCTACTCAAATCAAGCTGACAAAAGGATTCACAGCCAAGGAGCATGTCAAAGGGCATACGGTGAATGTTGTGAAAGGTTTG AAGTTATACGAGTCAATATTCACTGATTCTGAGCTGTCTAAGTTGACTGATTTCGTCGACGAACTCCGGGTTGCTGGCCAGAATGGTGAACTCTCAGGCG AGACTTTTATTTTATTCAACAAGCAGGTGAAGGGAAACAAGAAGGAGCTGATTCAGCTTGGGGTTCCAATTTTTGGACATATAAAAGAGGAAGCTGCAAG CAACAACCCATCAAGCAATATAGAGCCAATTCCAGCTCTTCTCCAAGGTGTCATTGATCACCTGGTTCAATGGCAATTAATTCCAGAATATAAAAAACCT AATGGATGCATCATCCATTTCTTTGATGAGGAGGAATATTCACAACCTTTTCTGAAGCCACCTCATCTAGACCAACCAATCTCTACTCTTATCCTCTCAG AATCAACAATGGCCTTTGGGCGTATTCTCGGGAGTGATAGTGATGGTAATTATAGAGGATCGCTCTCCCTCCTTCTGAAAAAAGGGTCTCTTTTAGTGAT GAGGGGAAACAGTGCTGACATGGCCGGACATGCCATGTGCCCGTCTTCAAACAAAAGGGCCAGCATAACTTTCTTCAGAGTGCGTCCTGAATCCAAACAA GGGCAGTCACCACCAACTAGTCCCATGAACGGTGCCATGACCCTATGGCAACCTAGCATCCCGAGCCCATATCCAGTGCCTAACGGAGCTCTTGATGGCT ATGAGCCAATGGATTCAATGCCTCCTAACTGGGGAGTTCTTAGTTCTCCGGTGGTTATGCTCGCTCCAATGCGCCCTATGGTCTTGAGTCCCAAAAGAAT GCCCAATGGTGGTACAGGGGTTTTTCTGCCCTGGGCTGTAGGATCTAGAAAACCTGCAAAACATCTTCCACCCCGTGCCCAAAGAGGACGCCTTCTTGCA CTATCCTCTCCAGTCGAAACACATGTAGCAGCTTCTGCTTCTGATACAGGTATCAGTATTGAAGGGAAATCGGCCTGA
AA sequence Show only first row Show all	>Potri.014G137700.2 pacid=42764324 polypeptide=Potri.014G137700.2.p locus=Potri.014G137700 ID=Potri.014G137700.2.v4.1 annot-version=v4.1 MAAGAVSPTDHQGTPPVVPVPMMMADTIAKDAILAWFRGEFAAANAIIDALCSHLAQLDAGSEYEAVFAAIHGRRLNWIPVLQMQKYHSIADVALELKRV AETKLEAASFGNVETDKFSDEKVKISVENGHVAQEEEEDSPDSDITDSGSQEVKPASENNDDICANHEDCGLRPTQIKLTKGFTAKEHVKGHTVNVVKGL KLYESIFTDSELSKLTDFVDELRVAGQNGELSGETFILFNKQVKGNKKELIQLGVPIFGHIKEEAASNNPSSNIEPIPALLQGVIDHLVQWQLIPEYKKP NGCIIHFFDEEEYSQPFLKPPHLDQPISTLILSESTMAFGRILGSDSDGNYRGSLSLLLKKGSLLVMRGNSADMAGHAMCPSSNKRASITFFRVRPESKQ GQSPPTSPMNGAMTLWQPSIPSPYPVPNGALDGYEPMDSMPPNWGVLSSPVVMLAPMRPMVLSPKRMPNGGTGVFLPWAVGSRKPAKHLPPRAQRGRLLA LSSPVETHVAASASDTGISIEGKSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Potri.014G137700 [exp]	0	1
					Potri.002G155700 [exp]	2.44	0.8753
AT4G13780			methionine--tRNA ligase, putat...		Potri.001G317500 [exp]	2.82	0.8699
AT4G24730			Calcineurin-like metallo-phosp...		Potri.012G089300 [exp]	4.24	0.8212	WR3.1
AT1G03280			Transcription factor TFIIE, al...		Potri.010G102000 [exp]	5.19	0.8667
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.008G219000 [exp]	8.77	0.8195
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.003G178600 [exp]	11.18	0.8334
AT1G02330			unknown protein		Potri.014G110200 [exp]	12.44	0.7963
AT4G26450		WIP1	unknown protein		Potri.011G169200 [exp]	13.85	0.8455
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Potri.013G083300 [exp]	13.96	0.8158
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Potri.008G138000 [exp]	14.49	0.7934

Compare expression of checked genes

Potri.014G137700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.