Plant FIBer expression Database

Potri.014G137850 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G48090 44 / 2e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G287500
[exp]
283 / 3e-97 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008165
[exp]
48 / 2e-06 AT2G43990 74 / 3e-14 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G137850.1 pacid=42762435 polypeptide=Potri.014G137850.1.p locus=Potri.014G137850 ID=Potri.014G137850.1.v4.1 annot-version=v4.1
ATGGAAAGGAACAGCAACAGCAACAGCTGCCCTAAGGTTGTGTATGAAAAACTATACAAAGCTGTTACTGTCTCTCCAGCTTTCCAAGCAATTCGCCGCA
TCTCAAGTCGCCCACGAGATCCTAGGCCTGATAGCCCTGCTCCAAATTCTTCACCACCACCACCTCTTTCTAAGAAAATCATTGATAACCAACCCCAGAC
ATATTCTCCAAAAAAACATCGCAAGTCAGCAGAAAGTGCCAGAAGGCATGACACGCCTAGAAATAGAGAAGCAGCAGAAACGGTTCCTGTCAACTTCGAT
TTTCAAAGCCAGAGTATTCCAGCAAATGGGAAATCCAAGTCAACCACTCCACATCCTCCCATTCCAAAGACCACCCAAGTCGCTTCCAGGGTTATTGAAC
CTGAAGCTAAAACATCAAGCATGGCTATTGTACAAAGTCCAAGCCAAGGAAACAAGGCCAGTCATCCCAAGCTTGAATCACCTCAACATAATAAGCTGGA
AGAAGGTAATGATAAACGAGGGATGCACATTGAAGATAGGTTCACCGACTACATCAAACGCGCAAGGATTAAGATCAGGACTTTGTCAAATGCTGGGCAT
GAAAAACAACATGCTAGTCCAGGACAAGATAAGTTCACGGATTACATTAACCGTGCCAAGGTTAAGCTTAGAACTACATCAAGTATTGGCGGTGAAAAGT
CTTAA
AA sequence
>Potri.014G137850.1 pacid=42762435 polypeptide=Potri.014G137850.1.p locus=Potri.014G137850 ID=Potri.014G137850.1.v4.1 annot-version=v4.1
MERNSNSNSCPKVVYEKLYKAVTVSPAFQAIRRISSRPRDPRPDSPAPNSSPPPPLSKKIIDNQPQTYSPKKHRKSAESARRHDTPRNREAAETVPVNFD
FQSQSIPANGKSKSTTPHPPIPKTTQVASRVIEPEAKTSSMAIVQSPSQGNKASHPKLESPQHNKLEEGNDKRGMHIEDRFTDYIKRARIKIRTLSNAGH
EKQHASPGQDKFTDYINRAKVKLRTTSSIGGEKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G48090 unknown protein Potri.014G137850
[exp]
0 1
AT5G57240 ORP4C OSBP(oxysterol binding protein... Potri.006G076400
[exp]
2.00 0.9740
AT1G75170 Sec14p-like phosphatidylinosit... Potri.007G025900
[exp]
3.46 0.9635
AT2G18360 alpha/beta-Hydrolases superfam... Potri.007G024400
[exp]
4.89 0.9642
AT1G20990 Cysteine/Histidine-rich C1 dom... Potri.005G258800
[exp]
4.89 0.9362
AT5G08640 ATFLS1, FLS flavonol synthase 1 (.1.2) Potri.002G086700
[exp]
5.47 0.9542
AT2G45560 CYP76C1 "cytochrome P450, family 76, s... Potri.012G136600
[exp]
5.91 0.9567 CYP80D1
AT1G03700 Uncharacterised protein family... Potri.019G100300
[exp]
6.48 0.9578
AT4G33790 G7, FAR3, CER4 FATTY ACID REDUCTASE 3, ECERIF... Potri.004G185100
[exp]
6.70 0.9630
AT1G58100 TCP TCP8 TCP domain protein 8, TCP fami... Potri.004G222100
[exp]
6.78 0.9378
AT2G44290 Bifunctional inhibitor/lipid-t... Potri.006G195700
[exp]
9.38 0.9535

Potri.014G137850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.