Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ZCF61.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63900 548 / 0 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT1G59560 367 / 5e-127 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT1G54150 66 / 6e-12 E3 Ubiquitin ligase family protein (.1) AT4G14365 54 / 5e-08 XBAT34 XB3 ortholog 4 in Arabidopsis thaliana (.1) AT3G23280 54 / 6e-08 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT4G24204 51 / 1e-07 RING/U-box superfamily protein (.1.2.3) AT1G68820 52 / 2e-07 Transmembrane Fragile-X-F-associated protein (.1) AT5G04460 52 / 4e-07 RING/U-box superfamily protein (.1.2.3) AT1G30860 51 / 6e-07 RING/U-box superfamily protein (.1) AT2G38185 50 / 8e-07 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065500 [exp] 74 / 1e-14 AT1G54150 341 / 3e-115 E3 Ubiquitin ligase family protein (.1) Potri.001G168700 [exp] 69 / 1e-12 AT1G54150 301 / 1e-99 E3 Ubiquitin ligase family protein (.1) Potri.007G050500 [exp] 52 / 6e-08 AT4G24204 81 / 4e-20 RING/U-box superfamily protein (.1.2.3) Potri.006G100400 [exp] 52 / 3e-07 AT2G38185 341 / 2e-113 RING/U-box superfamily protein (.1.2.3.4) Potri.008G116400 [exp] 52 / 3e-07 AT1G68820 667 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Potri.016G116300 [exp] 52 / 3e-07 AT5G01450 348 / 3e-116 RING/U-box superfamily protein (.1) Potri.014G020900 [exp] 52 / 4e-07 AT5G01450 116 / 9e-29 RING/U-box superfamily protein (.1) Potri.001G251900 [exp] 52 / 5e-07 AT5G01450 327 / 7e-108 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 51 / 7e-07 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027994 [exp] 610 / 0 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10008163 [exp] 600 / 0 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10003391 [exp] 130 / 2e-36 AT1G63900 124 / 1e-34 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10000533 [exp] 68 / 2e-12 AT1G54150 349 / 5e-119 E3 Ubiquitin ligase family protein (.1) Lus10010392 [exp] 55 / 1e-08 AT4G24204 86 / 7e-22 RING/U-box superfamily protein (.1.2.3) Lus10002487 [exp] 56 / 3e-08 AT5G01450 347 / 5e-115 RING/U-box superfamily protein (.1) Lus10021710 [exp] 55 / 4e-08 AT1G18470 687 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10035057 [exp] 55 / 5e-08 AT1G68820 639 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Lus10032471 [exp] 52 / 3e-07 AT1G18470 701 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10042969 [exp] 52 / 3e-07 AT1G18470 698 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12483 [poplar] [flax] GIDE E3 Ubiquitin ligase CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.014G138000.1 pacid=42764522 polypeptide=Potri.014G138000.1.p locus=Potri.014G138000 ID=Potri.014G138000.1.v4.1 annot-version=v4.1 ATGATGATCCCATGGGGTGGAATCAGTTGCTGTTTGAGCGGAGCTGCTCTCTATTTACTTGGCAGGAGCAGCGGCAGGGATGCGGAGGTTCTTAAGTCAG TTGCAAAAGTCAATCAGCTGAAGGAATTGGCAAAGTTGCTGGATATTGAAAGTAAAGTCTTACCACTGGTTGTTGCAATCTCTGGAAGAGTTGGTGCTGA GTCTCCAATAAGTTGCGAGTTTAGTGGGTTGAGAGGTGTTATAGTAGAGGAGACGGCTGAACAACATTTCCTCAAGCACAATGATGCTGGATCCTGGATT CAGGACTCAGCCTTAATGCTATCAATGAGTAAAGAGGTCCCATGGTACCTGGATGACGGCACTGACCGAGTGTATGTTGTGGGGGCCCGAGGTGCTTCTG GTTTTGTGTTGACTGTTGGAAGCGAAGTGTTTGAAGAGTCAGGACGATCACTTGTACGAGGAACATTAGACTATCTCCAAGGCCTCAAGATGCTTGGAGT TAAGCGAATTGAAAGGGTACTTCCAACTGGTACTTCATTGACTGTGGTTGGCGAGGCTGTCAAAGATGATATTGGAACAGTTCGGATTCAGCGTCCTCAT AAAGGACCTTTTTATGTATCCCCAAAGTCAATTGATGAACTCATTGGGAATTTGGGGAAGTGGGCAAGGTGGTATAAGTACGCCTCATTGGGTTTGACAG TTTTTGGTGCTTTCCTGATCACCAAGCATGTTATACGGTATATCATGGAGAGAAGGCGCCGTTGGGAATTGCAGAGCAGGGTTCTTGCCGCTGCTAAGAG ATCAGGCCAAGATAACGAGGGTTCAAATGATAAGGCTGAGAACGGTTCAGATGGTGCCAAGAGAGAACGTCCAATTCCAGATCTATGTGTGATATGCCTT GAGCAGGAGTACAATGCTGTTTTTCTCCCGTGTGGTCATATGTGCTGTTGTATAACATGTTGTTCGCAATTGAGCAACTGTCCTCTTTGTCGAAGACGGA TAGAGCAGGTAGTGAAGACTTTCCGCCATTGA
AA sequence Show only first row Show all	>Potri.014G138000.1 pacid=42764522 polypeptide=Potri.014G138000.1.p locus=Potri.014G138000 ID=Potri.014G138000.1.v4.1 annot-version=v4.1 MMIPWGGISCCLSGAALYLLGRSSGRDAEVLKSVAKVNQLKELAKLLDIESKVLPLVVAISGRVGAESPISCEFSGLRGVIVEETAEQHFLKHNDAGSWI QDSALMLSMSKEVPWYLDDGTDRVYVVGARGASGFVLTVGSEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAVKDDIGTVRIQRPH KGPFYVSPKSIDELIGNLGKWARWYKYASLGLTVFGAFLITKHVIRYIMERRRRWELQSRVLAAAKRSGQDNEGSNDKAENGSDGAKRERPIPDLCVICL EQEYNAVFLPCGHMCCCITCCSQLSNCPLCRRRIEQVVKTFRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Potri.014G138000 [exp]	0	1	Pt-ZCF61.1
AT3G10330			Cyclin-like family protein (.1...		Potri.006G048400 [exp]	1.41	0.7250	TFIIB1.2
AT3G13690			Protein kinase protein with ad...		Potri.003G034900 [exp]	1.41	0.7160
AT2G29900		PS2	Presenilin-2 (.1)		Potri.015G058301 [exp]	7.54	0.6698
AT4G30310			FGGY family of carbohydrate ki...		Potri.018G095700 [exp]	13.60	0.6652
AT1G63770			Peptidase M1 family protein (....		Potri.003G129500 [exp]	17.83	0.6511
AT4G39860			unknown protein		Potri.005G076000 [exp]	27.71	0.5891
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Potri.006G157800 [exp]	33.46	0.6129
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Potri.001G127300 [exp]	34.77	0.5892
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Potri.012G082700 [exp]	39.69	0.6350
AT5G18590			Galactose oxidase/kelch repeat...		Potri.008G214900 [exp]	43.63	0.6370

Compare expression of checked genes

Potri.014G138000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.