Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48110 1425 / 0 MED33B, REF4 reduced epidermal fluorescence 4 (.1) AT3G23590 1374 / 0 MED33A, RFR1 REF4-related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G215600 [exp] 2162 / 0 AT2G48110 1371 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.008G201600 [exp] 1565 / 0 AT3G23590 1682 / 0.0 REF4-related 1 (.1) Potri.016G142500 [exp] 885 / 0 AT3G23590 871 / 0.0 REF4-related 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000663 [exp] 1666 / 0 AT2G48110 1484 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10029646 [exp] 1568 / 0 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10034021 [exp] 1525 / 0 AT3G23590 1721 / 0.0 REF4-related 1 (.1) Lus10027998 [exp] 1523 / 0 AT2G48110 1370 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10004434 [exp] 1520 / 0 AT3G23590 1722 / 0.0 REF4-related 1 (.1) Lus10041229 [exp] 1399 / 0 AT3G23590 1595 / 0.0 REF4-related 1 (.1) Lus10042689 [exp] 309 / 6e-92 AT2G48110 324 / 4e-98 reduced epidermal fluorescence 4 (.1) Lus10028033 [exp] 63 / 7e-11 AT2G48120 91 / 6e-22 pale cress protein (PAC) (.1), pale cress protein (PAC) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G138400.1 pacid=42763699 polypeptide=Potri.014G138400.1.p locus=Potri.014G138400 ID=Potri.014G138400.1.v4.1 annot-version=v4.1 ATGACGGTGAGTAGTAGTGTATGGGACTCGGTTCTTGAACACACCATGTCAGCTCAGGTCAAGAACAGTGAGCCGCACCTATGGGCGATTCAACTCAGCT CCAGTCTCAACTCTGCAGGCGTTGATTTGCCCTCATTGGAGCTGGCTCGCCTGTTAGTCTCTCACATCTGCTTCGATAATCACGTGCCTATCACGTGGAA GCTCCTCGAGAAGGCCCTCTCCCTCAACCTCGCCCCTCCCTTGCTCGTCCTCGCACTTCTTTCTACCAGGGTTGTTCCGAATCGAAAGCTCCACCCAGCA GCTTATAGGCTTTATATGGAACTTGTTAAGAGACATGCCTTTTCTTTTTCAGCACTAATCAATGCCCAAAACTACCAAATGACCATGAAATCAATAGATG ATGTTGTTCATCTTTCCCAAATATTTGGCGTGCAATTGTGTGAACCTGGGATTCTTCTGGTTGAATTTGTCTTTTCAATTGTGTGGCAGCTACTTGATGC TTCCTTGGATGATGAAGGGTTGCTGGAACAAAGCTTGGAAAAGAATTCTAGATGGCTGTCCAGACTGCAGGATATGGAAATAGATGGCAATGAGAACTTC AGTGAGAAGAGAAATGAGCACCATGAGGGGTTGCACAAAGTGAACACTACAATGGCTATCGAGCTAATTGAAGAGTTTTTAAAAAACAAAGTAACCTCAA GTATACTTTACTTGGCACGTCAAAACATGCCCTCACATTGGGGAGGCTTCATTGAGCGATTGCAACTGCTTGTAGTGCATTCCACAGCTTTGAGAAACTC AAAACACACAACTCCAGATGCCTTTCTGCAGTTGACATCTGACACCCACAGGGTTTTGTCTCGAGAGGGCAAAACAATATCACACCATGAGTTTCACGCA GTCATGTTTTCTGGGTCACTCAAATCTTCTGTTGGTCAATGCCATGGGGCAAGTCACTCTGCGGTTTGGCTACCTATTGACCTATTTTTAGAAGACACTA TGGATGGGTCACTAGTGACAACAACTAGTGCAGTAGAAAATCTTATCAGTTTGGTCAAAGCTCTGCAAGCAGTCAATCGTACCACTTGGCATGATACTTT TCTAGGCCTGTGGATTGCAGCGTTACGGCTTGTTCAAAGGGAAAGGAATACTAGTGAGGGTCTAATGCCTCGCGTTGATACAAGCTTGTCCATGTTATTG TCTATTACAACCCTTGTAGTGACTAATCTTATCGAGGAAGAGGAAAGTGAATTGATTGATGAAACGCAGCAGAACCCTGCCAATCAAAGAAAAGAAAAAC AGGGGAAGCTTCAGAAGGGTCTAATTACTTCCCTACAGCTATTGGGTGATTATGAGGGTTTGTTGACTCCGCCTCAGTCAGTTAGCTCAATAGCTAATCA AGCTGCCGCAAAAGCTACAATGTTTATCTCGGGCCTCACTGTCAGAAATGGTTATAGCATGAGTATCAATGACATGCCAGTCAACTGTTCTGGAAACTTG AGGCATCTGATTGTTGAGGCTTTTATTGCAAGAAATATGTTGGACACGTCAGCATATTTATGGCCAGGCTATGTGAATGCTCGTGCCAACCAAGTACCTA GGGGTGTTCCCAGTCAAACAACTGGCTGGTCATCATTGATGAACGGGTCACCTTTAACCCCTTCAATGATAAACATTTTGGTTTCAACTCCAGCTTCCAG CTTACCAGAGGTCGAGAAAATATATGAGATTGCAGTCAATGGTTCTGGTGATGAGAAGATATCTGCTGCTGCTATTCTTTGTGGAGCCTCTTTTGTTCGT GGTTGGAATATACAGGAACATACAATTCTTTTCATTATAAATTTGATGTCGCCTCCAGTTCCTGCTGATCACTCTGGGACTGAGAGTCACTTGATAAATT ACGCTCCACTTTTAAATGTTCTTCTCGTTGGAATATCATCTGTGGATTGCGTGCAGATTTTGTCCTTACATGGTTTGGTTCCGCTACTTGCTGGTGCATT GATGCCCATCTGTGAGGCCTTTGGCTCCGCTGTTCCCGAGGTCTCATGGACTCTTCCACCAACAGGGGAAGAACTTTCTTGTCATGCAGTGTTTTCTAAT GCATTTACACTTCTGCTGAGATTGTGGAGATTTGATCATTCACCTCTCGATCATGTGTTGGGAGACATACCACCAGTGGGATCCCATCTAAGCCCTGAAT ACCTCTTACTTGTACGGAATTCCCTATTAGCGTCCTTTGGACCTTCAACTAGGAGTCAACTCAAACTTAGGAGATACTCAAAAATCTTGAGTCTGTCTGT AGAACCAGTATTCATGGATTCTTTCCCGAATTTGAAACTCTGGTACAGAAAACATCTGGAATGTATTGCTTCTACCTTTTCTGGCCTTGTACATGGGACT CCTGTTCACCAGATTGTTGATGCACTCCTCAATTTGATGTTCAGAAGGATAAATAGAGGCGTTCAGCCTTCGACTTCTGGAAGCAGTCTTTCTTCTGGCC CTGGTGCTGAAGATGCTCAAGCTAGACTTAAAATACCTGCATGGGATATCTTAGAAGCAACTCCATTTGCACTTGATGCTGCTCTGACAGCCTGTGCCCA TGGAAGACTCTCTCCCCGTGAACTGGCTACAGGGCTTAAAGATCTTGCTGATTTTCTGCCAGCGTCTTTGGCCACTATTGTAAGCTATTTTTCAGCTGAA GTTACACGGGGCATATGGAAGCCAGCTTCTATGAATGGAACTGATTGGCCAAGCCCAGCTGCAAATTTATCCTCTGTTGAGCAACAGATAAAGAAAATAC TGGCTGCAACTGGTGTTGATGTCCCAAGCCTTTCTGTAGGGGGTACTCTGGCTACACTTCCTTTGCCATTAGCTGCCCTAGTAAGCCTCACAATTACTTA TAAATTGGACAAAATGTCTGAAAGGTTCCTCACCCTGATTGGCCCAGCCGTGAATGCCCTTGCTGCTGGTTGCTGGCCATGCATGCCCATTATAGCCGCT TTATGGGCACAGAAGGTTAAGCGTTGGAGTGACCACCTTGTGTTCTCTGCTTCTCGTACTGTATTCCACCATAATAGTGATGCTGTAGTTCAGCTTCTGA AGAGTTGCTTCTCATCCACTCTTGGTTTAAGCCCCTCACACATTTCCAGCAATGGTGGTGTGGGTGCCCTTTTAGGTCACGGGTTTGGCCCCCACTTTTC TGGTGGGATCTCTCCTGTTGCCCCTGGAATTCTCTACTTGCGAGTGCACCGATCTGTAAGAGATGTCATGTTTATGGCAGAAGAAATTCTCTCGCTTCTA ATGCATTCTGTTAGAGATATTGCAAGCAGTGCGTTGCCTAAAGGGGCAATGGAGAAATTGAAGAAAAGCAAACATGGGATGCGATACGGGGAAGTTTCTC TTGCTGCAGCAATGACGCGTGTCAAGCTTGCAGCTTCACTTGGAGCTTCTTTAGTTTGGGTTTCTGGTGGATTAAGTTTGGTTCAATCTTTGATTAATGA AACCTTACCCTCTTGGTTTATATCAGTCCATGGGTCGGAGCAGGAAGGTGGAGAATCTGGAGGTATGGTTGCAATGCTAAGGGGTTTTGCACTTGCATAC TTTGCAATGTTTTGTGGGACATTTGCATGGGGTGTGGACTCAGAATCAGCAGCATCAAAAAAACGGCCAAAGGTGCTCAGGACCCACTTAGAATATCTGG CAAGTGCTCTAGAGGGGAAAATATCGCTTGGTTGTGATTGGGCTACTGCATGGGCGTATGCATCCGGGTTTGTGTGCTTGATGGTGGCTTGCACACCAAA ATGGGTGCTTGAGGTTGATGTGGATGTATTGAAGAGGGTGAGCAAGGGGCTGAGACAATGGAATGAGGAAGAACTGGCTGTGGCCTTGCTGGGACTAGGT GGAGTTGGTACAATGGGCGCAGCAGCTGAACTGATTATTGAAACCGGATTGTAA
AA sequence Show only first row Show all	>Potri.014G138400.1 pacid=42763699 polypeptide=Potri.014G138400.1.p locus=Potri.014G138400 ID=Potri.014G138400.1.v4.1 annot-version=v4.1 MTVSSSVWDSVLEHTMSAQVKNSEPHLWAIQLSSSLNSAGVDLPSLELARLLVSHICFDNHVPITWKLLEKALSLNLAPPLLVLALLSTRVVPNRKLHPA AYRLYMELVKRHAFSFSALINAQNYQMTMKSIDDVVHLSQIFGVQLCEPGILLVEFVFSIVWQLLDASLDDEGLLEQSLEKNSRWLSRLQDMEIDGNENF SEKRNEHHEGLHKVNTTMAIELIEEFLKNKVTSSILYLARQNMPSHWGGFIERLQLLVVHSTALRNSKHTTPDAFLQLTSDTHRVLSREGKTISHHEFHA VMFSGSLKSSVGQCHGASHSAVWLPIDLFLEDTMDGSLVTTTSAVENLISLVKALQAVNRTTWHDTFLGLWIAALRLVQRERNTSEGLMPRVDTSLSMLL SITTLVVTNLIEEEESELIDETQQNPANQRKEKQGKLQKGLITSLQLLGDYEGLLTPPQSVSSIANQAAAKATMFISGLTVRNGYSMSINDMPVNCSGNL RHLIVEAFIARNMLDTSAYLWPGYVNARANQVPRGVPSQTTGWSSLMNGSPLTPSMINILVSTPASSLPEVEKIYEIAVNGSGDEKISAAAILCGASFVR GWNIQEHTILFIINLMSPPVPADHSGTESHLINYAPLLNVLLVGISSVDCVQILSLHGLVPLLAGALMPICEAFGSAVPEVSWTLPPTGEELSCHAVFSN AFTLLLRLWRFDHSPLDHVLGDIPPVGSHLSPEYLLLVRNSLLASFGPSTRSQLKLRRYSKILSLSVEPVFMDSFPNLKLWYRKHLECIASTFSGLVHGT PVHQIVDALLNLMFRRINRGVQPSTSGSSLSSGPGAEDAQARLKIPAWDILEATPFALDAALTACAHGRLSPRELATGLKDLADFLPASLATIVSYFSAE VTRGIWKPASMNGTDWPSPAANLSSVEQQIKKILAATGVDVPSLSVGGTLATLPLPLAALVSLTITYKLDKMSERFLTLIGPAVNALAAGCWPCMPIIAA LWAQKVKRWSDHLVFSASRTVFHHNSDAVVQLLKSCFSSTLGLSPSHISSNGGVGALLGHGFGPHFSGGISPVAPGILYLRVHRSVRDVMFMAEEILSLL MHSVRDIASSALPKGAMEKLKKSKHGMRYGEVSLAAAMTRVKLAASLGASLVWVSGGLSLVQSLINETLPSWFISVHGSEQEGGESGGMVAMLRGFALAY FAMFCGTFAWGVDSESAASKKRPKVLRTHLEYLASALEGKISLGCDWATAWAYASGFVCLMVACTPKWVLEVDVDVLKRVSKGLRQWNEEELAVALLGLG GVGTMGAAAELIIETGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Potri.014G138400 [exp]	0	1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G038400 [exp]	2.44	0.8729
AT3G62010			unknown protein		Potri.002G184400 [exp]	2.44	0.8858
AT5G22450			unknown protein		Potri.010G238400 [exp]	3.60	0.9005
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.011G043600 [exp]	4.35	0.8405
AT5G27460			Tetratricopeptide repeat (TPR)...		Potri.005G160100 [exp]	6.00	0.8649
AT5G58270		ABCB25, ATATM3,...	STARIK 1, ARABIDOPSIS THALIANA...		Potri.013G160500 [exp]	6.32	0.8381	STA1.2
AT1G20670			DNA-binding bromodomain-contai...		Potri.004G206200 [exp]	11.83	0.8267
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.009G034900 [exp]	13.74	0.8341
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Potri.008G050400 [exp]	13.74	0.8378
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	14.66	0.8645

Compare expression of checked genes

Potri.014G138400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.