Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63070 400 / 4e-117 Tudor/PWWP/MBT domain-containing protein (.1) AT2G48160 386 / 4e-112 Tudor/PWWP/MBT domain-containing protein (.1) AT5G23150 251 / 1e-67 HUA2 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) AT5G08230 228 / 3e-60 Tudor/PWWP/MBT domain-containing protein (.1) AT5G27650 51 / 6e-06 Tudor/PWWP/MBT superfamily protein (.1) AT5G02950 45 / 0.0003 Tudor/PWWP/MBT superfamily protein (.1) AT3G05430 45 / 0.0003 Tudor/PWWP/MBT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092700 [exp] 246 / 7e-66 AT5G23150 478 / 2e-144 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Potri.007G071600 [exp] 246 / 7e-66 AT5G23150 485 / 1e-146 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Potri.004G130600 [exp] 64 / 9e-10 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1) Potri.012G081500 [exp] 46 / 0.0003 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042690 [exp] 695 / 0 AT2G48160 282 / 1e-77 Tudor/PWWP/MBT domain-containing protein (.1) Lus10028004 [exp] 525 / 1e-164 AT2G48160 371 / 5e-109 Tudor/PWWP/MBT domain-containing protein (.1) Lus10013433 [exp] 250 / 6e-67 AT5G23150 466 / 2e-140 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10040980 [exp] 249 / 1e-66 AT5G23150 480 / 1e-145 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10017398 [exp] 212 / 3e-55 AT5G23150 432 / 5e-128 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10010197 [exp] 212 / 3e-55 AT5G23150 445 / 2e-132 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10032141 [exp] 58 / 5e-08 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10014546 [exp] 56 / 2e-07 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF00855 [poplar] [flax] PWWP PWWP domain CL0020 [poplar] [flax] TPR PF04818 [poplar] [flax] CID CID domain
Representative CDS sequence Show only first row Show all	>Potri.014G138700.7 pacid=42763835 polypeptide=Potri.014G138700.7.p locus=Potri.014G138700 ID=Potri.014G138700.7.v4.1 annot-version=v4.1 ATGGCGCCCAGTCGCAGGAAAGGTGCCGCCGGAAAAGCAGCTGCTGCCGCCGCCGCTCGCCGTCAATGGAAGGTGGGCGATCTCGTCCTTGCTAAAGTCA AAGGCTTTCCTGCTTGGCCTGCCACAGTAAGTGAGCCGGAGAAGTGGGGCTATCCGAATCCAGCTGATTGGAAGAAAATACTCGTCTATTTCTTTGGAAC CCAGCAAATAGCCTTCTGCAACCCCGCCGATGTTGAACCATTTACTGAAGAGAAGAAACAAACACTGTTGATGAAACGCCAGGGGAGGGGTGCAGATTTT GTTCGTGCAGTGCAAGAGATCATTGATAGTTATGAGAAGTTAAAGAAGCAGGATCGAGTTGTTTTGAGCTCAGACGATGGCCCTACTCATGCAAATGGTG GGAATTCATTAGAGTCTTCAAATCACTTTGAGGTGAAGGATCAAAGAGAAACTTCAGAAGCAACTATTACAGGTAGAAATGATCTGAGTCTTCAAATTGA TGATGCTTCTGCTGAAGCAAAAATTGGTTCTTTGCATCACAAAGATGCGTTATTGGAGCAACCTCCTGATAATGTGGTGATTAGAGAAAAGCCTATAATC ACCACCTACACTTCAAGGAAAAGATCTGGAGGTTTACGATCTAGGAAACGTATCATGCAGGAAAAGGCACCTTCAATTGAAAGGTCTAGAAGCTCTTCCC GGTTGGAGTCCAGTAGATTTCAAAACTTCATGATGCCACCAGATGATGGTAATAAGAGTTCAGGAGATATGTCAATTGATTGTATCCAGGACAGATCTTT GCGAAGCACTAGGCAAATCAAGAAATCACCAGATGATTCTGAGTGCGACAATGCAGATTCATCTGCTTTTGTTTCTAATGTCAGCATCGAAGATAATGGT TCTGAAATTATCACAGCTGACTCTGATTCCCTTAGCTTGAATGAAGGTAGTACTCTGGATAGTGGTTCTAGACTCGAGACCTCTGAAACTGCTGTTCAAT GTTTGGAGGGAGATATTGAGTTGAGCAGAGGGCTTGATTTCCAAATAAAGAATGTTGTTATAAGAAAGAAAAGGAAACAAAACAGAAAGCGAGCAACTGA TGAAGTGGCTGAGCCAACAGTCAGACTGGAAACAGAGGCAGATGTGGATGTAGGATTCAATGATAATAACCAAAATTCCCAATTTGCATGTAAAAATTTG AATATAAATCAAATTAAAGAAGATGGAGATGAGCACTTGCCACTAGTGAAACGAGCTAGAGTTAGAATGGGCAAACAATCATCTTTGGAGGAGGAACACA ATAATTTTACTCGAGCTGAAGAACGAAGACCAAATGAAGTTGCCTTCAATGCAATGGAGGAAGACAATAGCTTTTTTCAACCTGAAGAAAGAACATCTCT TGAAGCTGGAGTTAATACATTGGAGCCGATTAGCTCCTCCTCAAATTGCAACAGTGATATTGTTGCTCATAGAGATTCGTTGGTGGTGAGGGGAATTTTT AGTAATGTCTCACCCTCAAAGAATTGCACTCCAATTCAAGAGGATAAGTCCCAGCTTTTGAGAGTCAAGGAAATCCAATCCTTTTGCAGTTCTGCTGACA GTGAATCTGCTTTACCTCCATCTAAACGTCTTCATCGTGCTTTGGAAGCCATGTCAGCGAATGCTACTGAAGGTCAAGCTTTTATTGAAACATCAACCGT GAAAACATTTATCATTGGTAGTTCCATTTCTTCAATAAAGAGTGCTTCTGATATGGTGACTGTAAGTAAAGAAAACAGTGATTCAGAAGAGCAGATCGTA GACTCTCCTGGCAACATGGTTTCTTCATTCTCATCTGGCTCCAAGAAAATTTTAGAGGAATCCAATAAATCGTCATTGGATGTCAAAATTTGCAATGAAC CTGGAAGCATCAAGGGTCCAGGGCTTTGCAAAGAGGTCTTTCCAGAGGCTACAGACCAAGGTGCTGACAAAGATCTCAGTGGATTATGTTTTGAAACTGG CAATACTTGTATTTCTACTCAAGCCCGATCTCCATTGCATTTGATGCCTAATCTTGATAGAAGACAAGCTAGTCTGCTATCCCGTCATGGTTCATTGGGT CAGTTGTTGCTTCCAAAAGATGAAGGCAATTCTGATGACACTGAATTAAAAGACTTCGGGGATGGAAATGCTAATAAAGAACTTCATACTTCCAAAGATT CTGGGATGAGTCCAAATATTATCTCTCAGGCTGATGACGCCGCTAAAGTTTCCCCTCAAAGTGGTGCAAATCTCCCTCGATTCACTGCAGAGGAAGTTGG TTATGAGGATTCTGAGACTGTTAGGCCTCAAATTGATTCTGACAGCCAAGCTAATGGCATTTGTGAGGTGGCAAAAGATGTAAACTGTGACCAGCGGCAG AAGGAAGCTAGTCATGTTTCTTTTTCCGAATATCATTTGGATGACAAGGATGACTTGGCCCAGTCAAGTCTGCCTCCAGCTGATAGAGTAGAATGTCCTG CACAAATATTTACTCCTAATGCCTCAGTCCACGTGTCTACTTCAGAAAGTGTTAATTTTATTCAAAACAGTGGGTCTTCTAGTCCTAATTCCCTTTCACA CCCAAAGAAAATTGTGAGCACTTCGGTTTCTGATGAAGATAAAATTGAGTCAGCAGTGCCTCAAAGACCAAAATCAGTTGGGAAATGGAATAATTGTGCA GAAGCACACGCTGCTTTGTCATCCTTTGAAGCAATACTTGGATCATTAACAAGGACGAAGGAGAGCATTAGTCGAGCAACACGCATGGCTATTGACTGTG CAAAGTTTGGTGTATCTGCTAAGGTGGTGGAGATTCTTGCTCGTAGTTTGGAAAGTGAGTCAAATTTACATAAAAGGGTGGATTTATTCTTTCTTGTGGA TTCCATTGCCCAGTGCTCTCGAGGTTTAAAAGGTGATGTTGGTGGTATATATCCATCGGCTATTCAAACTGTACTGCCACGCCTACTTTCAGCTGCTGCT CCTCCTGGAAGTTTTGCACAAGAAAATCGGAGACAGTGTTTGAAGGTTTTGAGGCTTTGGCTGGAAAGACGGATTCTTTCTGAATCCATTATTCGCCATC ACATTTGGGAACTTGATATACTTGGTGGTTCATCTTCTGCTGGCCTATATTCTCGTCGCTCAGCAAGAACAGAAAGAGCTTTAGATGATCCTGTTAGAGA CATGGAGGGTATGCTTGTGGATGAATACGGAAGCAATTCAAGTTTCCAGCTTCCGGGATTTTGTATGCCCCGCATGCTTAAGGATGAAGATGATGGAAGT GATTCTGATGGAGGGTTTGAGGCTGTCACCCCAGAACATTATGCTGAAGCTCCTGAATATCAGGAGTTTACTCCTGCAGTAGAGAAACATACACATATCT TGGAAGATGTTGATGGTGAGCTTGAAATGGAGGATGTGGCCCCCTCTTGTGAGGCTGAAATGAGTTCAACCAGTGGCATTGGTGGAGGTGATGCTGCATG TAATTCACACAATCAGCTTGAACAGTGCTTACCACAGCCCTTCGCCCCTCCTCTTCCACAGGATGTGCCGCCGTCATCACCACCATTGCCGTCATCACCA CCACCACCGCCGCCTCCCCCACCTCCTCCTGCTGCACCCTGTTCATCTGCAATGCCTGATTCTTATACTAGTGGTGTTGATTCAAATATTTATACAAATT CACATGATTTGCAAGATGACTTGAGACAACCTTTGACTCAGAATTCTGTTCCACCAAGAATCAACCCTTCATTGTCCAATGCAGTGCTTTGTCGTACACC TGAATGTAGAGATCAGATGCAGGTGCAGCATTGTGACTCGACCAGATCTTTCAGCAATTATCCTGTATGTCAATCAAATAATGTTCATCGCACTGATGGT CCTAGCTTCCATCATAAAGCATATCCTCCAAGGCCGCAACACCCTCCTCCCTCGAATCAGTTTTCTTATGTTCAGGCAAACCAACATGTGAAGTCTCGAA GAGAAATCCCACCCCCTTCCTACTTCAACAGATTCCAGCATTCACATGATTTTGATTGTGGAAACTTTTATAATAACCATGAAAGAATGAGACCTGGCCC ATACGAGCTTAATGATGGCTGGAGATTTCCTGCCCCCTTTCCTGGTCCAAGATATCCTGACAAAGCCAAAGCATCCTATGCACCTGTTCCTTATGATGGC CCTCCACAGGAGCCAACTAGATTACCGCATCAAGAGTGGGATTTTCATGCCCAGGGGATGTATCACAGAAACTTTATGCCTTCTAGACCTCCTCCTGAAT GTGCAATTCCAGTGACAAATAGAGCTCCGAGCATTTGGCGGCCAAGATGA
AA sequence Show only first row Show all	>Potri.014G138700.7 pacid=42763835 polypeptide=Potri.014G138700.7.p locus=Potri.014G138700 ID=Potri.014G138700.7.v4.1 annot-version=v4.1 MAPSRRKGAAGKAAAAAAARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGYPNPADWKKILVYFFGTQQIAFCNPADVEPFTEEKKQTLLMKRQGRGADF VRAVQEIIDSYEKLKKQDRVVLSSDDGPTHANGGNSLESSNHFEVKDQRETSEATITGRNDLSLQIDDASAEAKIGSLHHKDALLEQPPDNVVIREKPII TTYTSRKRSGGLRSRKRIMQEKAPSIERSRSSSRLESSRFQNFMMPPDDGNKSSGDMSIDCIQDRSLRSTRQIKKSPDDSECDNADSSAFVSNVSIEDNG SEIITADSDSLSLNEGSTLDSGSRLETSETAVQCLEGDIELSRGLDFQIKNVVIRKKRKQNRKRATDEVAEPTVRLETEADVDVGFNDNNQNSQFACKNL NINQIKEDGDEHLPLVKRARVRMGKQSSLEEEHNNFTRAEERRPNEVAFNAMEEDNSFFQPEERTSLEAGVNTLEPISSSSNCNSDIVAHRDSLVVRGIF SNVSPSKNCTPIQEDKSQLLRVKEIQSFCSSADSESALPPSKRLHRALEAMSANATEGQAFIETSTVKTFIIGSSISSIKSASDMVTVSKENSDSEEQIV DSPGNMVSSFSSGSKKILEESNKSSLDVKICNEPGSIKGPGLCKEVFPEATDQGADKDLSGLCFETGNTCISTQARSPLHLMPNLDRRQASLLSRHGSLG QLLLPKDEGNSDDTELKDFGDGNANKELHTSKDSGMSPNIISQADDAAKVSPQSGANLPRFTAEEVGYEDSETVRPQIDSDSQANGICEVAKDVNCDQRQ KEASHVSFSEYHLDDKDDLAQSSLPPADRVECPAQIFTPNASVHVSTSESVNFIQNSGSSSPNSLSHPKKIVSTSVSDEDKIESAVPQRPKSVGKWNNCA EAHAALSSFEAILGSLTRTKESISRATRMAIDCAKFGVSAKVVEILARSLESESNLHKRVDLFFLVDSIAQCSRGLKGDVGGIYPSAIQTVLPRLLSAAA PPGSFAQENRRQCLKVLRLWLERRILSESIIRHHIWELDILGGSSSAGLYSRRSARTERALDDPVRDMEGMLVDEYGSNSSFQLPGFCMPRMLKDEDDGS DSDGGFEAVTPEHYAEAPEYQEFTPAVEKHTHILEDVDGELEMEDVAPSCEAEMSSTSGIGGGDAACNSHNQLEQCLPQPFAPPLPQDVPPSSPPLPSSP PPPPPPPPPPAAPCSSAMPDSYTSGVDSNIYTNSHDLQDDLRQPLTQNSVPPRINPSLSNAVLCRTPECRDQMQVQHCDSTRSFSNYPVCQSNNVHRTDG PSFHHKAYPPRPQHPPPSNQFSYVQANQHVKSRREIPPPSYFNRFQHSHDFDCGNFYNNHERMRPGPYELNDGWRFPAPFPGPRYPDKAKASYAPVPYDG PPQEPTRLPHQEWDFHAQGMYHRNFMPSRPPPECAIPVTNRAPSIWRPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63070			Tudor/PWWP/MBT domain-containi...		Potri.014G138700 [exp]	0	1
AT5G42950			GYF domain-containing protein ...		Potri.002G262300 [exp]	2.44	0.8890
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.010G220000 [exp]	3.74	0.8923
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.007G071600 [exp]	5.65	0.8858
AT5G22450			unknown protein		Potri.010G238400 [exp]	6.63	0.8897
AT1G77800			PHD finger family protein (.1....		Potri.002G089400 [exp]	8.36	0.8857
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Potri.015G041500 [exp]	10.00	0.8378
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	10.58	0.8781
AT5G22450			unknown protein		Potri.008G020600 [exp]	13.67	0.8433
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.004G147800 [exp]	14.07	0.8653
AT3G21290			dentin sialophosphoprotein-rel...		Potri.003G033100 [exp]	16.24	0.8774

Compare expression of checked genes

Potri.014G138700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.