Plant FIBer expression Database

Potri.014G139000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G03290 268 / 1e-82 unknown protein
AT4G02880 265 / 1e-81 unknown protein
AT5G64980 72 / 2e-13 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028005
[exp]
250 / 1e-73 AT1G03290 280 / 2e-84 unknown protein
Lus10028006
[exp]
224 / 2e-66 AT1G03290 262 / 2e-80 unknown protein
Lus10012381
[exp]
175 / 4e-48 AT1G03290 238 / 2e-71 unknown protein
Lus10012382
[exp]
143 / 6e-36 AT1G03290 172 / 1e-45 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G139000.5 pacid=42763864 polypeptide=Potri.014G139000.5.p locus=Potri.014G139000 ID=Potri.014G139000.5.v4.1 annot-version=v4.1
ATGGGTTTCAGTACAGTTTATAAATGCTTGACGGACGTGTTTCCTCAGGTTGATGCACGAATTCTGAAGGCAGTTGCCATTGAACATTCAAAAGATGCCG
ATATTGCTGCTGAAGTTGTTCTTTCAGAGGTTATTCCTTCACTTTCCAGGCATTCTGCAGCTCCTAGTCCTCCCTGTGAGGATACCAGCCCAAGTCTTCC
ATTAGATGGACAAACCGAACAAGAGGAAGAAACTGGGCTGAGGCATCGGCAGGTTAGTTTGGTGAAAAGTGTGAGATCTTCTGAACCAGGATTGATAGCC
GAAGAAGATGATGGGAAAACTGAGTTAACAAGTGGTGTCAATGATGGTGATTCAACCCATCAAGAAAATAGGCAGGATCAACCTATAGTTGTACCTTCTG
GTGCAAATGCTGACACCAATCAGTTGCAAGGGCATATTGAAACCGAACAAGAGGAAGAAACTGGGCTGAGGCATCGGCAGGTTAGTTTGGTGAAAAGTGT
GAGATCTTCTGAACCAGGATTGATAGCCGAAGAAGATGATGGGAAAACTGAGTTAACAGGTGGTGTCAATGATGGTGATTCAACCCATCAAGAAATTAGA
CAGGATCAACCTGTAGTTGTACCTTCTGGTGCAAATGCTGACACCAATCAGTTGCAAGGGCATATTGAAAGTGATGAATTGATACTGCTGGGAAAGCCCC
AACACCAAGAAGGCATTTCGCAGCCTGGGTCAAGTCAGACTCTGATACTAGTGTCAAATGATTTGCTGCTGGGAGTTAATGCTGAAAATATGAATTCCAA
GCAATATAGACAAATTGAACTTCTTGAAGAGATTGTCGAAGCTGCTAAAGACAACAAGAAAACCTTGTTTTCGGCAATGGAGTCAGTTATGAACATGATG
AAAGAGGTTGAACTTCAAGAGATATCTGCAGAACAAGCTAAAGAGGAGGCTGCTAGGGGAGGTTTGGACATTCTAGTCGAGGTGGAGAAACTCAAACAGA
TGCTGGTACATGCGAAAGAGGCAAATGACATGCATGCTGGAGAAGTTTATGGGGAGAAGGCAATCCTAGCTACTGAAGTGAGGGAGTTGCAGGCTCGACT
ACTTAGCTTATCAGATGAAAGAGATAATGCTCTTGCTATTCTTGATGAGATGCGCCAAACCCTCGAATCACGACTAGCTGCAGCAGAGGAGCTAAGGAAA
ACAGCTGAGTTAGAGAAGCTGGAAAAGGAGGAGACTGCACGAAATGCTCTTGCCGAGCAAGAAATCATAATGGAGAAGGTGGTGCAAGAGTCAAAAATTC
TACAAAAGGAGGCGGAGGAGAATGCTAAGCTGCAGGAGTTTCTTATGGACCGTGGTTGTGTTGTTGATACATTGCAAGGAGAAATATCTGTTATCTGTCA
GGATGTGAGACTGCTGAAAGAGAGATTCGATGAGCGTGTACCATTGAGTAAATCTGTTTCTTCAAGCCAGACTAGTTGCATTTTAGCCTCGTCAGGTTCA
TCCATTAAAAGCATGGCATCCAATCTGGCCGCTGAAACAGGCGAGACATCTGAGCTTCCAAAAGAGCCAATCCTTGCTTGCTCAGTGGAAAGGGATTTCT
CTAATGAGAAACAGCTTTTGGATGATGGATGGGATTTCGTGGAAGAGTGA
AA sequence
>Potri.014G139000.5 pacid=42763864 polypeptide=Potri.014G139000.5.p locus=Potri.014G139000 ID=Potri.014G139000.5.v4.1 annot-version=v4.1
MGFSTVYKCLTDVFPQVDARILKAVAIEHSKDADIAAEVVLSEVIPSLSRHSAAPSPPCEDTSPSLPLDGQTEQEEETGLRHRQVSLVKSVRSSEPGLIA
EEDDGKTELTSGVNDGDSTHQENRQDQPIVVPSGANADTNQLQGHIETEQEEETGLRHRQVSLVKSVRSSEPGLIAEEDDGKTELTGGVNDGDSTHQEIR
QDQPVVVPSGANADTNQLQGHIESDELILLGKPQHQEGISQPGSSQTLILVSNDLLLGVNAENMNSKQYRQIELLEEIVEAAKDNKKTLFSAMESVMNMM
KEVELQEISAEQAKEEAARGGLDILVEVEKLKQMLVHAKEANDMHAGEVYGEKAILATEVRELQARLLSLSDERDNALAILDEMRQTLESRLAAAEELRK
TAELEKLEKEETARNALAEQEIIMEKVVQESKILQKEAEENAKLQEFLMDRGCVVDTLQGEISVICQDVRLLKERFDERVPLSKSVSSSQTSCILASSGS
SIKSMASNLAAETGETSELPKEPILACSVERDFSNEKQLLDDGWDFVEE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G03290 unknown protein Potri.014G139000
[exp]
0 1
AT3G20890 RNA-binding (RRM/RBD/RNP motif... Potri.009G053200
[exp]
1.00 0.9128
AT5G08535 D111/G-patch domain-containing... Potri.008G003100
[exp]
1.41 0.9095
AT5G36930 Disease resistance protein (TI... Potri.017G105501
[exp]
2.64 0.8869
AT1G70000 MYB myb-like transcription factor ... Potri.010G039233
[exp]
3.87 0.8912
AT2G31670 Stress responsive alpha-beta b... Potri.001G413500
[exp]
5.74 0.9060
AT3G15040 Protein of unknown function, D... Potri.006G209500
[exp]
6.00 0.8643
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Potri.013G045000
[exp]
7.07 0.8741
AT4G27540 PRA1.H prenylated RAB acceptor 1.H (.... Potri.011G116200
[exp]
9.16 0.9005
AT4G39150 DNAJ heat shock N-terminal dom... Potri.004G158300
[exp]
16.73 0.8363
AT5G22300 AtNIT4, NIT4 nitrilase 4 (.1) Potri.004G199600
[exp]
16.97 0.8500 Pt-NIT2.2

Potri.014G139000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.