Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2) AT3G19950 67 / 1e-12 RING/U-box superfamily protein (.1) AT2G15580 65 / 2e-12 RING/U-box superfamily protein (.1.2) AT5G17600 66 / 3e-12 RING/U-box superfamily protein (.1) AT1G18770 62 / 3e-12 RING/U-box superfamily protein (.1) AT1G18760 64 / 4e-12 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT3G55530 64 / 1e-11 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) AT5G66070 63 / 1e-11 RING/U-box superfamily protein (.1.2) AT3G13430 63 / 2e-11 RING/U-box superfamily protein (.1.2.3) AT5G56340 63 / 4e-11 ATCRT1 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G083001 [exp] 64 / 3e-12 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.015G127600 [exp] 66 / 4e-12 AT1G68180 158 / 1e-46 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 65 / 5e-12 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 64 / 1e-11 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 64 / 1e-11 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 64 / 2e-11 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.012G126700 [exp] 63 / 2e-11 AT1G68180 138 / 4e-39 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 63 / 3e-11 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.009G034700 [exp] 62 / 4e-11 AT3G55530 333 / 1e-115 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001421 [exp] 147 / 5e-41 AT2G42770 274 / 7e-90 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10003400 [exp] 68 / 5e-14 AT5G53110 152 / 3e-45 RING/U-box superfamily protein (.1) Lus10015167 [exp] 68 / 7e-13 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10020258 [exp] 67 / 2e-12 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10002637 [exp] 66 / 3e-12 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10019018 [exp] 66 / 6e-12 AT5G53110 332 / 4e-112 RING/U-box superfamily protein (.1) Lus10031515 [exp] 65 / 6e-12 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10030120 [exp] 62 / 3e-11 AT2G15580 139 / 2e-41 RING/U-box superfamily protein (.1.2) Lus10010179 [exp] 61 / 1e-10 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10013397 [exp] 61 / 2e-10 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.014G139400.1 pacid=42764197 polypeptide=Potri.014G139400.1.p locus=Potri.014G139400 ID=Potri.014G139400.1.v4.1 annot-version=v4.1 ATGAACAGCAGCACCAACAATGTCACGCGAACCCCATCGTATTGGTACAGTGAACAAGACTATGATGATACCTATGCTCCCAACAACAGTAGCAGGAATT ATCAAAGGATGCCCACGTTTTCCCATTTCCGCCGCTCCGCCTCCCAAGCCCGTCCGGAGCCGAATAGAGGAGGTTCACAAGATACATGGCGGCCGGCGGT GGAGGAAAGAGCCATAACAGTACCTCTCGGTCTAGCTGGATTTTCTATGCAGCCAGCTTCACCCGTGCAAGTTCTTTTCCTAAATACCAGACTGGCAAGA GAGCTACCAGGGCCCTCACGCCAACGAAATTGGCAAGCCTCTTCATCTACACAAGCGGATCGCTCCAGATCAACCCAAGATGAGCAAAACAAAGCATTGG CACAGCTGAAGAAAGAAACCTATAACCCTATCCCGAAAAGGATGACAACTAGATTGAGTTTGTATTACAGAGACCGTGCCATTGATGCTGTTAAAGACAG GGCACGGGAGACAGAAGATGATGGCAAAAGATGTGCGATCTGCCTAGAAGATTTCGAGCCCAAAGAGTCGGTAATGGTGACCCCTTGCAACCATATGTTT CATGAGGAATGTATTGTGCCATGGGCGAAGAGTAATGGGAAATGCCCTGTTTGTCGGTTTGTGCTCTGCGACCGAGCCGGAGGAAGTGCAGCGCCAGCGC AGAACATCGAAAGTTTCGCAGGCAATGACGTATTTGAAGGAGAGCTAATTTCAGTCATGAGGGCCATGGAAGAGGCTTTCATACGGGGCAACACATCACG TTGGTAA
AA sequence Show only first row Show all	>Potri.014G139400.1 pacid=42764197 polypeptide=Potri.014G139400.1.p locus=Potri.014G139400 ID=Potri.014G139400.1.v4.1 annot-version=v4.1 MNSSTNNVTRTPSYWYSEQDYDDTYAPNNSSRNYQRMPTFSHFRRSASQARPEPNRGGSQDTWRPAVEERAITVPLGLAGFSMQPASPVQVLFLNTRLAR ELPGPSRQRNWQASSSTQADRSRSTQDEQNKALAQLKKETYNPIPKRMTTRLSLYYRDRAIDAVKDRARETEDDGKRCAICLEDFEPKESVMVTPCNHMF HEECIVPWAKSNGKCPVCRFVLCDRAGGSAAPAQNIESFAGNDVFEGELISVMRAMEEAFIRGNTSRW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58720			RING/U-box superfamily protein...		Potri.014G139400 [exp]	0	1
					Potri.012G085800 [exp]	2.00	0.9336
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G120100 [exp]	2.23	0.9183
AT4G31240			protein kinase C-like zinc fin...		Potri.006G279400 [exp]	2.44	0.9273
					Potri.012G085901 [exp]	5.29	0.9215
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Potri.017G078300 [exp]	6.32	0.8853	PIN14
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.005G060000 [exp]	6.92	0.8595
					Potri.006G098500 [exp]	7.34	0.8860
AT1G24577			unknown protein		Potri.006G159300 [exp]	8.48	0.8406
AT3G60720		PDLP8	plasmodesmata-located protein ...		Potri.002G145400 [exp]	8.66	0.8792
AT3G57810			Cysteine proteinases superfami...		Potri.008G177400 [exp]	8.94	0.8911

Compare expression of checked genes

Potri.014G139400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.