Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-VAR2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30950 1056 / 0 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 1046 / 0 FTSH8 FTSH protease 8 (.1) AT5G15250 813 / 0 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G50250 478 / 2e-159 FTSH1 FTSH protease 1 (.1) AT5G42270 477 / 3e-159 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT5G53170 386 / 4e-123 FTSH11 FTSH protease 11 (.1) AT2G26140 370 / 6e-118 FTSH4 FTSH protease 4 (.1) AT2G29080 363 / 2e-114 FTSH3 FTSH protease 3 (.1) AT1G07510 361 / 3e-113 FTSH10 FTSH protease 10 (.1) AT3G47060 350 / 3e-109 FTSH7 FTSH protease 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G215100 [exp] 1149 / 0 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 842 / 0 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.002G012000 [exp] 480 / 2e-160 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 475 / 1e-158 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G220366 [exp] 420 / 2e-143 AT1G06430 405 / 1e-138 FTSH protease 8 (.1) Potri.015G020700 [exp] 378 / 4e-120 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.006G227700 [exp] 375 / 9e-120 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.012G000700 [exp] 370 / 7e-117 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.016G099800 [exp] 357 / 5e-112 AT2G29080 1123 / 0.0 FTSH protease 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001420 [exp] 1094 / 0 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001054 [exp] 1084 / 0 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10012277 [exp] 468 / 9e-159 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 470 / 2e-156 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 466 / 8e-155 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10014930 [exp] 382 / 4e-122 AT5G53170 1077 / 0.0 FTSH protease 11 (.1) Lus10034572 [exp] 377 / 4e-122 AT5G42270 791 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10039334 [exp] 377 / 2e-119 AT5G53170 1087 / 0.0 FTSH protease 11 (.1) Lus10038819 [exp] 375 / 2e-119 AT5G53170 1064 / 0.0 FTSH protease 11 (.1) Lus10001060 [exp] 374 / 2e-118 AT5G53170 1090 / 0.0 FTSH protease 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01434 [poplar] [flax] Peptidase_M41 Peptidase family M41 CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily)
Representative CDS sequence Show only first row Show all	>Potri.014G139500.1 pacid=42762778 polypeptide=Potri.014G139500.1.p locus=Potri.014G139500 ID=Potri.014G139500.1.v4.1 annot-version=v4.1 ATGTTGTTGGATGTTAGAATACTGACCTTTGTACGTTTTGTATTTCTGGGATTGTTATTTGCTTTCGTCTGCTACCAGATGGCAGCGTCGTCGGCATGCC TTGTAGGAAATGGTTTATCGACCAGTAATGCCAAACGGAATTTGACGAAGGAGTTCTGTGGCAGTCATCTTTTTGTTTCTACCAGTGTTCCGTTATGTAA GACTTCAAGAATTTTAACTGTTAAGGCAGTTTTGGACAAGAGACGGCATGAAGGAAGAAGGGGTTTTCTGAAGCTGTTGATTGGGAATGTTGGGATTGTT GGATCCACTTTGCTAGGAGGTGGGAAAGCAATTGCTGATGACCAAGGGGTTTCTTCCTCCAGGATGTCATATTCTAGGTTTTTGGAGTATTTGGATAAGG ATAGGGTGGAAAAGGTAGACTTGTTTGAGAATGGAACCATTGCTATCGTAGAGGCTGTTTCACCTGAGTTGGGTAACCGGGTGCAGCGAGTTCGTGTTCA ACTTCCAGGGCTCAGCCAAGAGCTTCTTCAGAAGTTTAGAGAGAAGAACATTGACTTTGCTGCACATAATGCTCAGGAAGAATCAGGTTCCTTGCTATTC AACTTGATTGGGAATCTGGCATTTCCTTTAATCTTAATTGGAGGCCTGTTCCTTCTTTCTCGACGTTCATCAGGAGGAATGGGTGGGCCTGGTGGGCCTG GTTTCCCCTTAGCTTTCGGTCAATCTAAGGCAAAGTTCCAAATGGAACCAAGCACTGGTGTGACATTTGATGATGTTGCTGGAGTGGATGAAGCGAAGCA GGATTTCATGGAGGTAGTGGAGTTTCTTAAGAAGCCTGAGAGATTCACTGCAGTAGGGGCTCGCATTCCAAAAGGCGTTCTTCTTGTTGGGCCTCCAGGT ACTGGGAAAACTCTTCTGGCCAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTTTTCTCCATTTCAGGTTCGGAGTTTGTTGAGATGTTTGTCGGTGTTG GAGCCTCTAGAGTCCGGGATCTCTTCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTATTTGTGGATGAAATTGATGCTGTGGGAAGGCAAAGAGGAAC AGGAATCGGTGGAGGAAACGATGAAAGAGAGCAGACACTAAACCAGCTTCTGACAGAAATGGATGGTTTTGAGGGTAATACTGGCATCATTGTTATTGCG GCAACTAACAGGGCGGACATTCTCGACTCTGCCTTGTTGAGGCCAGGACGGTTTGACAGACAGGTGACTGTTGATGTCCCGGATATTCGAGGAAGAACAG AGATACTAAAAGTTCATGCCGGCAATAAGAAATTTGATGCTGATGTGTCTCTTGATGTGATATCCATGAGAACACCTGGTTTCAGTGGGGCTGATCTTGC AAATCTCTTGAATGAGGCAGCTATTCTAGCTGGTCGGCGTGGAAAGACAGCAATTTCATCTAAAGAGATTGATGATTCAATTGACAGGATTGTCGCTGGA ATGGAAGGAACTGTTATGACGGATGGAAAGAGTAAAAGTCTCGTTGCATATCATGAAGTTGGGCATGCTGTTTGCGGAACTTTGACTCCAGGGCATGATG CGGTTCAGAAAGTCACCCTAATTCCACGTGGCCAGGCACGGGGCCTCACCTGGTTTATTCCTACAGATGACCCCACATTGATCTCTAAGCAACAACTTTT TGCAAGAATAGTTGGAGGATTAGGTGGCAGAGCTGCTGAAGAAGTGATATTTGGTGAGCCTGAGGTGACCACAGGGGCAGCCGGTGATTTGCAGCAGATC ACGGGTCTGGCTAAGCAGATGGTAACCACGTTTGGAATGTCAGAAATTGGACCATGGTCACTAATGGATGCATCAGCTCAAAGCGCTGATGTCTTCATGA GAATGATGGCAAGGAATTCGATGTCAGAAAAGCTCGCAGAAGACATTGATGCTGCTGTGAAGAGGATATCAGACGGTGCATATGAAATTGCTTTGAGTCA CATAAGGAGCAACCGTGAAGCCATTGATAAGATTGTGGAAGTCCTCCTTGAGAAGGAAACTATGACCGGTGATGAGTTCCGAGCAATCCTCTCTGAGTTT GTTGAGATTCCCACCGAAAATCGGGTCCCCCCTGCAGTTCCCTCCCCTGTGTCAGTGTAA
AA sequence Show only first row Show all	>Potri.014G139500.1 pacid=42762778 polypeptide=Potri.014G139500.1.p locus=Potri.014G139500 ID=Potri.014G139500.1.v4.1 annot-version=v4.1 MLLDVRILTFVRFVFLGLLFAFVCYQMAASSACLVGNGLSTSNAKRNLTKEFCGSHLFVSTSVPLCKTSRILTVKAVLDKRRHEGRRGFLKLLIGNVGIV GSTLLGGGKAIADDQGVSSSRMSYSRFLEYLDKDRVEKVDLFENGTIAIVEAVSPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEESGSLLF NLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPSTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPG TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIA ATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHAGNKKFDADVSLDVISMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAG MEGTVMTDGKSKSLVAYHEVGHAVCGTLTPGHDAVQKVTLIPRGQARGLTWFIPTDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQI TGLAKQMVTTFGMSEIGPWSLMDASAQSADVFMRMMARNSMSEKLAEDIDAAVKRISDGAYEIALSHIRSNREAIDKIVEVLLEKETMTGDEFRAILSEF VEIPTENRVPPAVPSPVSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Potri.014G139500 [exp]	0	1	Pt-VAR2.3
AT3G19900			unknown protein		Potri.010G169700 [exp]	1.00	0.9733
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Potri.018G081200 [exp]	1.73	0.9717
AT3G27925		DEGP, DegP1, DE...	DegP protease 1 (.1)		Potri.001G348800 [exp]	2.00	0.9728
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Potri.005G084200 [exp]	3.31	0.9490
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Potri.015G047500 [exp]	3.74	0.9566
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.009G043800 [exp]	4.47	0.9653
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Potri.002G012000 [exp]	4.89	0.9678	FTSH2.2
AT3G20060		UBC19	ubiquitin-conjugating enzyme19...		Potri.010G220600 [exp]	4.89	0.9353
AT1G52855			unknown protein		Potri.011G124800 [exp]	6.32	0.9552
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033300 [exp]	6.48	0.9570

Compare expression of checked genes

Potri.014G139500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.