Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26680 556 / 0 SNM1, ATSNM1 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3) AT2G45700 254 / 6e-77 sterile alpha motif (SAM) domain-containing protein (.1) AT1G66730 211 / 3e-59 AtLIG6 DNA LIGASE 6 (.1) AT1G27410 131 / 1e-33 DNA repair metallo-beta-lactamase family protein (.1) AT1G19025 72 / 4e-13 DNA repair metallo-beta-lactamase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218300 [exp] 274 / 5e-84 AT2G45700 732 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Potri.004G094200 [exp] 208 / 2e-58 AT1G66730 1656 / 0.0 DNA LIGASE 6 (.1) Potri.013G149650 [exp] 120 / 4e-30 AT1G27410 396 / 5e-137 DNA repair metallo-beta-lactamase family protein (.1) Potri.013G121700 [exp] 96 / 2e-22 AT1G27410 315 / 3e-107 DNA repair metallo-beta-lactamase family protein (.1) Potri.007G106700 [exp] 69 / 2e-12 AT1G19025 571 / 0.0 DNA repair metallo-beta-lactamase family protein (.1) Potri.013G121201 [exp] 53 / 7e-09 AT1G27410 100 / 1e-26 DNA repair metallo-beta-lactamase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038078 [exp] 266 / 8e-81 AT2G45700 767 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Lus10017623 [exp] 214 / 3e-60 AT1G66730 1584 / 0.0 DNA LIGASE 6 (.1) Lus10033580 [exp] 176 / 7e-49 AT1G66730 456 / 1e-146 DNA LIGASE 6 (.1) Lus10013876 [exp] 63 / 3e-10 AT1G19025 478 / 7e-165 DNA repair metallo-beta-lactamase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0398 [poplar] [flax] RMMBL_DRMBL PF07522 [poplar] [flax] DRMBL DNA repair metallo-beta-lactamase
Representative CDS sequence Show only first row Show all	>Potri.014G139600.2 pacid=42763379 polypeptide=Potri.014G139600.2.p locus=Potri.014G139600 ID=Potri.014G139600.2.v4.1 annot-version=v4.1 ATGAGCACAATCGGCGGCGCCGGAGGAGATTATGATTCCAAAGAAGAATGGACCGAATTTGAATGGTCGGAAGATGGGCTCTCAATTATAGAGAATATTG AGGAGCAAAGTTACCAGATTCATCCATCGATTAAACAAGAAGAAGAAGAAGAAGATGGAGATGGTGGTGATGGGAGTTTCTCTGCGGAATTCTATCGGTG TGGAACCGATTGGTCTTGCCTGTCGCCGGCGGCTGAAGTAGTTGAACCTTCCCATTCAAGAAATCTGAAACAGGCGAATCTATGGCAGATGTGGGGCCAA AACAAACCTTCTTCCCTTTCCTCTCCGCCTCCGAAGAAGAAGCTGAAGCCAACTCAATTTTGCAGCCAAGGCAAGGCGGCTTCCTCGTCTCCTAAGCATA ACCGCCCTCGCGCTTGCCCTTTCTATAAACGGATTCCAGATACAGGTTTCTCAGTTGATGCATTCCGGTATGGTCCGATCCCAGGATGCTCTGCGTACTT CCTGACCCACTTCCATTATGATCATTACGGTGGCCTTACCAAAGGATGGTCTCATGGCCCTATTTATTGTACTCCTCTCACTGCTCGCCTCCTTACAATC TGTCTCTCCCTCAATTCCTTATATATTCATCCATTGGAACTTGACACAGAATATGTTATTCAAGGAGTTAAAGTAACATTACTAGAAGCTAATCACTGTC CCGGTGCTGCTCTCCTTCATTTCCGTCTCCCGACTGGACTCTGCTATTTGCACACTGGAGATTTCAGGGCTTCTAAACTTATGCAGGCCCATCCACTTCT TGCAAACAACAGAGTTAACGTGCTTTACTTAGATACAACCTATTGCAATCCAAAGTACAAGTTTCCTTCTAAGGAAGATGTGTTGAGTTATGTTGTTAGA GTTACTAAGAGTTCTCTCAAAAAGCAACCTAAAACCCTTGTTGTTGTCGGAGCGTATAGTATTGGCAAAGAGAGTGTTTATCTTGCCATTTCCAAGGCAT TAGGGGTTAAAATATATGCAAATAATTCAAGGAGACGGATTCTGCAATCTTTTGGTTGGCCTGATCTTTCGACGAATCTTTGTACAAAAGCTATAGACAC ATGTCTTCATGTGCTGCCCATATCTTCCCTGCGATATGAGACCTTGAAGGATTACTTGAAGAATCATGTAAATCAGTATGCAGCAGTTTTGGCATTCCGG CCAACAGGCTGGACTTACTCAGAAGGTTTAGGCAGAGAGCTTGATCTAATTAGGCCTAGCACTAGAGGCAACATCACAATATATGGAGTTCCATACAGTG AGCACTCTAGTTTCACAGAGCTGAGAGACTTTGTCGAGTTTTTGAAGCCTGACAAGATAATTCCTACAGTAAATGTTGGGAATCCAGATAATCGAGATAA GATGCAATCTTATTTCCGGGAATGGCTTAAAGGGTAG
AA sequence Show only first row Show all	>Potri.014G139600.2 pacid=42763379 polypeptide=Potri.014G139600.2.p locus=Potri.014G139600 ID=Potri.014G139600.2.v4.1 annot-version=v4.1 MSTIGGAGGDYDSKEEWTEFEWSEDGLSIIENIEEQSYQIHPSIKQEEEEEDGDGGDGSFSAEFYRCGTDWSCLSPAAEVVEPSHSRNLKQANLWQMWGQ NKPSSLSSPPPKKKLKPTQFCSQGKAASSSPKHNRPRACPFYKRIPDTGFSVDAFRYGPIPGCSAYFLTHFHYDHYGGLTKGWSHGPIYCTPLTARLLTI CLSLNSLYIHPLELDTEYVIQGVKVTLLEANHCPGAALLHFRLPTGLCYLHTGDFRASKLMQAHPLLANNRVNVLYLDTTYCNPKYKFPSKEDVLSYVVR VTKSSLKKQPKTLVVVGAYSIGKESVYLAISKALGVKIYANNSRRRILQSFGWPDLSTNLCTKAIDTCLHVLPISSLRYETLKDYLKNHVNQYAAVLAFR PTGWTYSEGLGRELDLIRPSTRGNITIYGVPYSEHSSFTELRDFVEFLKPDKIIPTVNVGNPDNRDKMQSYFREWLKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26680		SNM1, ATSNM1	SENSITIVE TO NITROGEN MUSTARD ...		Potri.014G139600 [exp]	0	1
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Potri.013G012600 [exp]	14.21	0.8270
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Potri.012G022800 [exp]	14.76	0.7377
AT4G06744			Leucine-rich repeat (LRR) fami...		Potri.001G302500 [exp]	25.51	0.8136
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G046400 [exp]	28.42	0.8082
AT5G27920			F-box family protein (.1)		Potri.005G022600 [exp]	31.36	0.6979
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G046100 [exp]	32.71	0.7959
					Potri.001G203500 [exp]	36.24	0.7947
					Potri.006G038250 [exp]	40.29	0.7924
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045600 [exp]	44.27	0.7907
AT5G24610			unknown protein		Potri.015G000900 [exp]	49.29	0.6312

Compare expression of checked genes

Potri.014G139600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.