Plant FIBer expression Database

Potri.014G139700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26670 647 / 0 Protein of unknown function (DUF803) (.1), Protein of unknown function (DUF803) (.2), Protein of unknown function (DUF803) (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G047400
[exp]
57 / 8e-09 AT1G34470 414 / 5e-145 Protein of unknown function (DUF803) (.1)
Potri.001G253100
[exp]
55 / 5e-08 AT1G34470 379 / 6e-131 Protein of unknown function (DUF803) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012589
[exp]
700 / 0 AT3G26670 644 / 0.0 Protein of unknown function (DUF803) (.1), Protein of unknown function (DUF803) (.2), Protein of unknown function (DUF803) (.3)
Lus10041504
[exp]
698 / 0 AT3G26670 642 / 0.0 Protein of unknown function (DUF803) (.1), Protein of unknown function (DUF803) (.2), Protein of unknown function (DUF803) (.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF05653 Mg_trans_NIPA Magnesium transporter NIPA
Representative CDS sequence
>Potri.014G139700.1 pacid=42762506 polypeptide=Potri.014G139700.1.p locus=Potri.014G139700 ID=Potri.014G139700.1.v4.1 annot-version=v4.1
ATGGGGGAGTGGGTCATCGGAGCTTTTATCAATCTTTTTGGCAGCATTGCTATCAACTTTGGGACTAACCTTCTTAAATTGGGTCATAATGAGAGAGAGA
GGCATTCCACGCAAGACAATGTGGGAACAAGTGGGAAGGTTCCTGTGAAGCCTATCATATATTTCCAGACATGGAGAGTTGGTATTCTATTTTTCTTTCT
TGGGAATTGTCTTAATTTCATTTCCTTTGGATATGCTGCTCAGTCGCTTCTTGCAGCCTTGGGATCTATTCAATTTGTATCAAACATTGCATTTGCTTAC
TTCGTGTTGAACAAAATGGTCACTGTCAAAGTCCTGGTAGCCACAGCCTTTATTGTTCTTGGAAATATATTTCTTGTTGCTTTTGGCAACCATCAGTCTC
CTGTGTACACACCAGAGCAGTTGGCAGAGAAATACAGCAATATGACATTCCTCTTTTACTGTCTGGTATTAATACTTCTTGTTGCCTTGCACCACTACAT
TTACAGGAGAGGAGAAATTATACTTGCCATTTCAGGACAAGATCTTAGACCTTATTGGCAAATGTTGCTTCCTTTCTCCTATGCTGTAGTTTCAGGTGCG
GTAGGATCGTGCTCAGTATTGTTTGCCAAATCTCTCTCCAATCTGTTAAGATTGGCCATGTCTAGTGATTATCAGCTGCACAGCTGGTTTACTTACTCCA
TACTTCTTCTATTTCTTAGTACAGCCGGATTTTGGATGACAAGGTTGAATGAAGGATTGGCACTCTTTGATGCAATTCTCATTGTGCCGATGTTTCAGAT
TGTTTGGACTTTCTTTTCCATTTGTACAGGATTTGTATATTTTCAGGAATACCAGGTATTTGATGCGCTAAGGACAACAATGTTCATACTAGGGATGACA
TCCGTATTCGTTGGAATTTCTCTGCTTGCACCAGATGAGTCCAGAGGTGGAGAGGTCAAAGATAATGCATCTTTGGTTCCAGTTGTGTCTTCAAGCATTT
CAATTGAAACAGACAGGCTGGTCATCTCATCCGAAGATGCACAAAATAAAGATCCGAGATCATTCGCGCAAGCAATGGTGATAAAAATTAAAGAGGTGTT
AGCCAAGGCAAAGACTGCTTGTTCATTATCACTAGGTTTCGGAGAGGATTCCATCAATGCATCTGCTGTTCTTGTGATGCCCATGGTGTCTTCAAAAATA
ACTGGCTTCAGAGGAACCGTCTTTGACCGACCTAAGTTTTTTTCCCTGAGAAATTCTGGTTGGAGTAAGATTTCAATGGATGATGATGGTGTAAATGTAT
TAGAAACAAACCCAGTGCTTCCTCAAACCCTTTGA
AA sequence
>Potri.014G139700.1 pacid=42762506 polypeptide=Potri.014G139700.1.p locus=Potri.014G139700 ID=Potri.014G139700.1.v4.1 annot-version=v4.1
MGEWVIGAFINLFGSIAINFGTNLLKLGHNERERHSTQDNVGTSGKVPVKPIIYFQTWRVGILFFFLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAY
FVLNKMVTVKVLVATAFIVLGNIFLVAFGNHQSPVYTPEQLAEKYSNMTFLFYCLVLILLVALHHYIYRRGEIILAISGQDLRPYWQMLLPFSYAVVSGA
VGSCSVLFAKSLSNLLRLAMSSDYQLHSWFTYSILLLFLSTAGFWMTRLNEGLALFDAILIVPMFQIVWTFFSICTGFVYFQEYQVFDALRTTMFILGMT
SVFVGISLLAPDESRGGEVKDNASLVPVVSSSISIETDRLVISSEDAQNKDPRSFAQAMVIKIKEVLAKAKTACSLSLGFGEDSINASAVLVMPMVSSKI
TGFRGTVFDRPKFFSLRNSGWSKISMDDDGVNVLETNPVLPQTL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G26670 Protein of unknown function (D... Potri.014G139700
[exp]
0 1
AT5G57815 Cytochrome c oxidase, subunit ... Potri.018G099900
[exp]
7.00 0.8975
AT5G58300 Leucine-rich repeat protein ki... Potri.013G158800
[exp]
7.54 0.9034
AT2G01070 Lung seven transmembrane recep... Potri.001G209400
[exp]
11.74 0.9054
AT3G53570 AME2, AFC1 FUS3-complementing gene 1 (.1.... Potri.016G079900
[exp]
12.28 0.8434 AFC1.1
AT1G10950 AtTMN1 transmembrane nine 1 (.1) Potri.003G015300
[exp]
15.03 0.9041
AT5G59890 ADF4, ATADF4 actin depolymerizing factor 4 ... Potri.009G028100
[exp]
15.23 0.8963 ADF6,Pt-ADF.6
AT3G01640 ATGLCAK ARABIDOPSIS THALIANA GLUCURONO... Potri.001G343400
[exp]
20.12 0.8989
AT2G32980 unknown protein Potri.014G158000
[exp]
21.63 0.9014
AT4G26570 ATCBL3 calcineurin B-like 3 (.1.2) Potri.011G094900
[exp]
24.49 0.8807 CBL2.1
AT5G11800 ATKEA6, KEA6 K+ efflux antiporter 6, ARABID... Potri.006G230400
[exp]
25.23 0.8886 Pt-ATKEA4.3

Potri.014G139700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.