Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52140 87 / 3e-21 unknown protein AT3G16330 77 / 3e-17 unknown protein AT4G29110 56 / 1e-09 unknown protein AT4G32860 50 / 1e-07 unknown protein AT5G38700 40 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086500 [exp] 93 / 2e-23 AT4G29110 139 / 3e-41 unknown protein Potri.001G188900 [exp] 93 / 2e-23 AT1G52140 127 / 2e-36 unknown protein Potri.006G236700 [exp] 91 / 8e-23 AT4G32860 94 / 4e-24 unknown protein Potri.018G046500 [exp] 86 / 1e-20 AT1G52140 94 / 1e-23 unknown protein Potri.003G049800 [exp] 85 / 3e-20 AT1G52140 129 / 1e-37 unknown protein Potri.014G123400 [exp] 50 / 8e-08 AT5G38700 144 / 4e-44 unknown protein Potri.002G198800 [exp] 46 / 3e-06 AT5G38700 157 / 3e-49 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025828 [exp] 93 / 3e-23 AT1G52140 138 / 8e-41 unknown protein Lus10038274 [exp] 91 / 2e-22 AT3G16330 124 / 2e-35 unknown protein Lus10010019 [exp] 57 / 5e-10 AT5G38700 164 / 8e-52 unknown protein Lus10006040 [exp] 55 / 7e-09 AT1G52140 78 / 2e-17 unknown protein Lus10005478 [exp] 53 / 3e-08 AT1G52140 89 / 2e-21 unknown protein Lus10037566 [exp] 51 / 7e-08 AT1G52140 79 / 2e-18 unknown protein Lus10014153 [exp] 50 / 2e-07 AT4G29110 84 / 1e-20 unknown protein Lus10034944 [exp] 41 / 0.0001 AT1G52140 100 / 3e-27 unknown protein Lus10001456 [exp] 40 / 0.0007 AT5G38700 132 / 4e-39 unknown protein Lus10012967 [exp] 39 / 0.0007 AT1G52140 105 / 5e-29 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [poplar] [flax] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Potri.014G139900.1 pacid=42764613 polypeptide=Potri.014G139900.1.p locus=Potri.014G139900 ID=Potri.014G139900.1.v4.1 annot-version=v4.1 ATGGAGGTGCATCCAAGGGTAAACTCTATGTTAGCCAAGAGGCTATGGAATGTTTTGAGGGTAACCTTCTTTATGATAAGGAAGGGATTGGTTTCAAAGA GGAAGTTGATCATGGACATGAATCTCATGATGAAGAGAGGGAAGCTCTTGAGGAAGTCCTTAAGCAACCTCATGTCCCTCCACCACCACACCCACCATCA TCACTCAAAGGATTTGGCACGCGGTAGCTTCGGCTTACAAGAATATGAATTCTCATGCAGCAACAGTCCTGATCTTGTTTTTTTCCGCATGCCAAAGCGC AAACACCATTATTTCCCCTGTATCAATCTCCCCGAGGTCATAGAAGAGGAGCAGCTTGAAGCAGAGGAGAGCAAGGGCGCAGTTGTCATGGTTCCAAAGA CTCCAGAGTACACTTTCAACATCCATTTTGATCACGCCTCTGAGTTCGCTCCGGGAGAGAAGCGTAGCCCTCTTCTCTCCCCGTTCTCGGTAAGAGTGTC AGATTATTCATCAGAAGATGAGAATGATGGTGGGAATGTACAGGTTGACGATGAAGCTGAAGAATTCATCAGAAGGTTTTATGAGCAGCTAAGGGTACAA AGTCGCATGCAATTGCTGCAGTATCAGGAAGCCTAA
AA sequence Show only first row Show all	>Potri.014G139900.1 pacid=42764613 polypeptide=Potri.014G139900.1.p locus=Potri.014G139900 ID=Potri.014G139900.1.v4.1 annot-version=v4.1 MEVHPRVNSMLAKRLWNVLRVTFFMIRKGLVSKRKLIMDMNLMMKRGKLLRKSLSNLMSLHHHTHHHHSKDLARGSFGLQEYEFSCSNSPDLVFFRMPKR KHHYFPCINLPEVIEEEQLEAEESKGAVVMVPKTPEYTFNIHFDHASEFAPGEKRSPLLSPFSVRVSDYSSEDENDGGNVQVDDEAEEFIRRFYEQLRVQ SRMQLLQYQEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52140			unknown protein		Potri.014G139900 [exp]	0	1
AT1G07120			unknown protein		Potri.009G073600 [exp]	8.12	0.8548
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Potri.001G115600 [exp]	8.71	0.8442	Pt-ACR7.1
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.009G089800 [exp]	20.19	0.8364
AT1G33230			TMPIT-like protein (.1)		Potri.011G147500 [exp]	22.02	0.8371
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.011G162500 [exp]	23.23	0.8378	Pt-TUB4.1
AT4G38870			F-box and associated interacti...		Potri.008G144000 [exp]	23.74	0.7684
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.017G139300 [exp]	25.51	0.8439
AT1G16860			Ubiquitin-specific protease fa...		Potri.008G006100 [exp]	25.98	0.8345
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.001G121700 [exp]	29.32	0.8297
AT3G60800			DHHC-type zinc finger family p...		Potri.002G147300 [exp]	30.72	0.7956

Compare expression of checked genes

Potri.014G139900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.