Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02065 680 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT2G42520 248 / 1e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 248 / 3e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 238 / 5e-72 DEA(D/H)-box RNA helicase family protein (.1) AT3G58510 238 / 5e-71 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT5G63120 234 / 7e-70 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G01540 222 / 4e-65 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 220 / 4e-64 DEAD box RNA helicase family protein (.1.2) AT3G06480 217 / 4e-61 DEAD box RNA helicase family protein (.1) AT4G33370 204 / 6e-59 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G217800 [exp] 253 / 1e-76 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 247 / 2e-74 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G061900 [exp] 239 / 2e-71 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G196000 [exp] 239 / 3e-71 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 235 / 4e-71 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 234 / 2e-69 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.019G130900 [exp] 227 / 2e-67 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G084600 [exp] 225 / 3e-66 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 224 / 1e-64 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006736 [exp] 726 / 0 AT3G02065 686 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10020088 [exp] 711 / 0 AT3G02065 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10015976 [exp] 246 / 5e-74 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 245 / 7e-74 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 241 / 3e-73 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 242 / 1e-72 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037646 [exp] 233 / 5e-70 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 233 / 6e-70 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10030075 [exp] 234 / 1e-69 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032135 [exp] 227 / 2e-66 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0175 [poplar] [flax] TRASH PF04438 [poplar] [flax] zf-HIT HIT zinc finger
Representative CDS sequence Show only first row Show all	>Potri.014G140100.1 pacid=42763131 polypeptide=Potri.014G140100.1.p locus=Potri.014G140100 ID=Potri.014G140100.1.v4.1 annot-version=v4.1 ATGAGCACACCACTTGTTGATGGACTCACTGTGTCTGAGGCTGCGGGAGATGATGTGAAAAAGACCTCTAGAGACCAGAGAGAAGCGCTGCCTGGGGAGC CTATATGTGTTGTTTGTGGTCGCTATGGTGAGTATATATGTGATCAGACTGATTCTGATATTTGCAGCTTGGAATGCAAACAAACTCTCTTAGGGAGGGC TGCTGACACCCACCTTCCAGTTGGCCACCCACTTCCTAAACGACTGGCTGCAACTGATGAGTGCTTTTATGTTAGAGACTCAGAATCTCCTTTAACTAGC GATCAAACAGAACTGCTGAGGAGGAAACTGGAAATCCATGTGAAGGGAGACTCAGTTCCAGATCCCATTTTGTCTTTCTCTTCTTGTAATCTTCCTGAGA AACTCCTGCACAACATACAGACTTTAGGATATGACATGCCGACACCTATACAGATGCAAGGTATTGCGGCTGCTTTGACCGGAAAAAGTCTGCTTGCTTC AGCTGACACTGGCTCAGGGAAAACTGCATCCTTTCTGGTTCCTGTTGTTTCTCGTTGTGCGACTTTTAGGCATGGGAATATATCTAAAAGTAAAAAGCCA CTAGCGATGGTTTTAACTCCAACCAGGGAGCTTTGTATACAGGTTGAGGAACAGGCTAAATTGCTAGGAAAGGGTTTGCCTTTTAAAACTGCCCTTGTGA TTGGCGGTGATGCCATGCCTAGACAACTGTACCGCATTCAGCAGGGTGTGGAACTCATTGTGGGAACTCCTGGTAGGCTTATTGATCTCTTAGCAAAGCA CGATATTGAACTAGATGACATAATGATATTGGTCCTGGATGAGGTGGACTGCATGCTTCAACAGGGCTTCCGAGATCAGGTTATGCAGATTTTCAGGGCT CTCTCACAACCCCAAGTGTTGATGTATTCGGCTACAATGTCACAAGAGGTAGAGAAGATGGCAAGCTCTATGGCAAAAGATTTAATTTTTGTTTCCATTG GCCAGCCTAACAGACCAAGTAAGGCCGTGAAGCAGCTGGCTATCTGGGTGGAGTCAAAACAAAAGAAGCAAAAGCTTTTTGACATATTGATGAGCAAGCA GCATTTTCTACCACCATCAATTGTATATGTGGGTTCCCGAATTGGGGCAGATCTCCTATCTAATGCAATCACAGTCACCACTGGATTGAAGGCCCTATCA ATTCATGGAGAGAAGTCTATGAAGGAGAGACGAGAGATAATGAAGTCATTTTTGGTTGGAGAGGTTCCTCTGGTTGTGGCTACTGGGGTTTTGGGTCGGG GAGTTGATCTCTTGGGCGTGAGACAGGTAATAGTGTTTGATATGCCCAATTGCATTAAGGAGTATGTCCATCAGATTGGGAGGGCATCGCGAATGGGAGA GGATGGTACATCTATTGTATTTGTTAATGAGGAGAACAGGAATTTATTTCCAGATTTGGTTGAAGTCTTAAAATCTTCCGGAGCTGTGATCCCTCGTGAG CTTGTTAATTCAAGGTATGTGAAGCGTTCTTTTCCTATGGGCAAGGGCCAGAGAAAGCGAAAGTATGGTTCATGA
AA sequence Show only first row Show all	>Potri.014G140100.1 pacid=42763131 polypeptide=Potri.014G140100.1.p locus=Potri.014G140100 ID=Potri.014G140100.1.v4.1 annot-version=v4.1 MSTPLVDGLTVSEAAGDDVKKTSRDQREALPGEPICVVCGRYGEYICDQTDSDICSLECKQTLLGRAADTHLPVGHPLPKRLAATDECFYVRDSESPLTS DQTELLRRKLEIHVKGDSVPDPILSFSSCNLPEKLLHNIQTLGYDMPTPIQMQGIAAALTGKSLLASADTGSGKTASFLVPVVSRCATFRHGNISKSKKP LAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVIGGDAMPRQLYRIQQGVELIVGTPGRLIDLLAKHDIELDDIMILVLDEVDCMLQQGFRDQVMQIFRA LSQPQVLMYSATMSQEVEKMASSMAKDLIFVSIGQPNRPSKAVKQLAIWVESKQKKQKLFDILMSKQHFLPPSIVYVGSRIGADLLSNAITVTTGLKALS IHGEKSMKERREIMKSFLVGEVPLVVATGVLGRGVDLLGVRQVIVFDMPNCIKEYVHQIGRASRMGEDGTSIVFVNEENRNLFPDLVEVLKSSGAVIPRE LVNSRYVKRSFPMGKGQRKRKYGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02065			P-loop containing nucleoside t...		Potri.014G140100 [exp]	0	1
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Potri.004G196800 [exp]	2.00	0.8877
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Potri.005G171300 [exp]	2.44	0.8808
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Potri.008G103000 [exp]	2.64	0.8613
AT1G44820			Peptidase M20/M25/M40 family p...		Potri.002G085400 [exp]	2.82	0.8725
AT5G08550		ILP1	increased level of polyploidy1...		Potri.008G002600 [exp]	2.82	0.8888
AT3G17920			Outer arm dynein light chain 1...		Potri.012G045300 [exp]	3.16	0.8648
					Potri.001G407650 [exp]	5.47	0.8405
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Potri.016G082900 [exp]	5.74	0.8482
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Potri.016G089000 [exp]	9.48	0.8558
AT5G17370			Transducin/WD40 repeat-like su...		Potri.003G155900 [exp]	9.94	0.8562

Compare expression of checked genes

Potri.014G140100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.