Plant FIBer expression Database

Potri.014G140400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02660 664 / 0 EMB2768 EMBRYO DEFECTIVE 2768, Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039064
[exp]
693 / 0 AT3G02660 666 / 0.0 EMBRYO DEFECTIVE 2768, Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
Lus10038795
[exp]
693 / 0 AT3G02660 664 / 0.0 EMBRYO DEFECTIVE 2768, Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF00579 tRNA-synt_1b tRNA synthetases class I (W and Y)
CL0492 S4 PF01479 S4 S4 domain
Representative CDS sequence
>Potri.014G140400.1 pacid=42764427 polypeptide=Potri.014G140400.1.p locus=Potri.014G140400 ID=Potri.014G140400.1.v4.1 annot-version=v4.1
ATGGCAGCTGCTGCTGCTGCAAGGACCTTGCTTTACTCCTCTCACAGCAAACTCTTCTTCTTTCCTTTTTCAAATTGCAGCAAAAAACTACACAGACCCA
TCATCAATAAGAATCCTATCTTCGTCCCTCTAAGGTGCTTGCAATCAGCCCAGCAAAATGCCTCCACAACCCGTGACCCAATGCGCAGCCGTTCCAGCGT
GGTCGATATCCTTGAAGAAAGGGGCTTGCTTGAATCCATCACCAGTGACAATCTCAGGTCTATCTCTACTACAAGCACTCTCAAGGCTTACTGTGGTTTT
GACCCAACTGCAGAGAGCTTGCACTTAGGTAACCTTCTGGGCATAATTGTTCTCTCCTGGTTCCAAAGGTGCGGCCATAAAGCTGTCGCCTTGATTGGCG
GCGCCACCGCCAGAATTGGAGACCCATCTGGGAAAAGCCTGGAAAGGCCAGAGCTTGATGCTGATACTTTAGAGAATAACACACAAGGGATTACCAATGT
TATTACAAGAATCTTGAATATGAATAGCAGCAGTAATGTTAATGGTGATGGCAATCATTTGAATTCAAGTTCTTTCTTTGTGGTTATGAATAATTATGAT
TGGTGGAAAGAGGTTAGGTTGCTTGATTTTTTGAAACAAGTAGGGAGATTTGCAAGGGTGGGGACTATGATGGGCAAAGAAAGTGTAAAGAAGAGGCTTG
AATCAGAGCAAGGAATGAGCTATACTGAATTCACTTACCAGCTTTTGCAGGGTTATGATTTCTTATATCTTTATCAAAATGAGGGTGTTAATGTTCAGAT
TGGAGGGAGCGATCAGTGGGGCAATATAACTGCTGGTACTGAACTTATTAGAAAGATTCTTCAGCCAGAAGGGGATGTGGCTTTTGGCTTGACATTCCCT
CTTCTATTGAAGAGTGATGGCACTAAATTTGGGAAATCAGAGGATGGTGCCATTTGGCTTTCACCGTCCTTGTTATCTCCTTACAAGTTCTACCAGTATT
TTTTTTCGGTCCCGGATGCTGATGTTATTAGGTTTTTAAAGATACTTACTTTCTTGGACATAGAGGAGATTGATGAGTTGGAGAAGGAAATGAATAGACC
TGGCTATACCCCCAACACTGCTCAGCGGAGGCTGGCTGAACAGGTCACTCTTTTTGTTCACGGTGAGGATGGACTTAATGAGGCTCTCAAGGCAACTGAG
GCTTTGAGACCTGGAGCTGAGACCAAGTTGGATTGGAAGACCTTTGAGGGCATTGCTGAAGATGTGCCTTCCTGTTCTTTGGCCTCTGACCAGGTTCTCA
ATATCTCTCTTATCGATCTTTCTGTTTCTTCCGGTCTGCTTGATAGTAAATCAGCTGCCCGCCGTCTGTTGAAGCAAGGAGGGCTTTACTTGAACAACAG
CAGAGTTGATAGCGAAACTAAGAGAATTGAACCTCAAGACATTGTGGATGGAAAAGTTCTCCTTTTATCTGCTGGCAAGAAGAACAAAGTCATTGTACGA
ATAACTTGA
AA sequence
>Potri.014G140400.1 pacid=42764427 polypeptide=Potri.014G140400.1.p locus=Potri.014G140400 ID=Potri.014G140400.1.v4.1 annot-version=v4.1
MAAAAAARTLLYSSHSKLFFFPFSNCSKKLHRPIINKNPIFVPLRCLQSAQQNASTTRDPMRSRSSVVDILEERGLLESITSDNLRSISTTSTLKAYCGF
DPTAESLHLGNLLGIIVLSWFQRCGHKAVALIGGATARIGDPSGKSLERPELDADTLENNTQGITNVITRILNMNSSSNVNGDGNHLNSSSFFVVMNNYD
WWKEVRLLDFLKQVGRFARVGTMMGKESVKKRLESEQGMSYTEFTYQLLQGYDFLYLYQNEGVNVQIGGSDQWGNITAGTELIRKILQPEGDVAFGLTFP
LLLKSDGTKFGKSEDGAIWLSPSLLSPYKFYQYFFSVPDADVIRFLKILTFLDIEEIDELEKEMNRPGYTPNTAQRRLAEQVTLFVHGEDGLNEALKATE
ALRPGAETKLDWKTFEGIAEDVPSCSLASDQVLNISLIDLSVSSGLLDSKSAARRLLKQGGLYLNNSRVDSETKRIEPQDIVDGKVLLLSAGKKNKVIVR
IT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G02660 EMB2768 EMBRYO DEFECTIVE 2768, Tyrosyl... Potri.014G140400
[exp]
0 1
AT2G38025 Cysteine proteinases superfami... Potri.016G110400
[exp]
2.82 0.9765
AT1G54500 Rubredoxin-like superfamily pr... Potri.005G049000
[exp]
2.82 0.9820
AT5G23040 CDF1 CELL GROWTH DEFECT FACTOR 1, P... Potri.012G057700
[exp]
6.16 0.9634
AT2G45330 TRPT, EMB1067 2' tRNA phosphotransferase, em... Potri.013G094500
[exp]
6.92 0.9611
AT1G32580 plastid developmental protein ... Potri.010G068300
[exp]
7.00 0.9694
AT5G66055 EMB16, EMB2036,... EMBRYO DEFECTIVE 2036, EMBRYO ... Potri.005G105800
[exp]
8.12 0.9695
AT5G17870 PSRP6 plastid-specific 50S ribosomal... Potri.002G112500
[exp]
8.66 0.9608
AT4G25130 PMSR4 peptide met sulfoxide reductas... Potri.015G112268
[exp]
8.94 0.9687
AT3G54210 Ribosomal protein L17 family p... Potri.006G113500
[exp]
9.16 0.9762
AT3G54090 FLN1 fructokinase-like 1 (.1) Potri.016G109600
[exp]
9.21 0.9701

Potri.014G140400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.