Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19090 80 / 5e-17 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT5G27690 78 / 1e-16 Heavy metal transport/detoxification superfamily protein (.1) AT3G06130 78 / 2e-16 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G23000 70 / 8e-14 Heavy metal transport/detoxification superfamily protein (.1) AT1G56210 67 / 6e-13 Heavy metal transport/detoxification superfamily protein (.1) AT5G66110 62 / 6e-12 HIPP27 heavy metal associated isoprenylated plant protein 27, Heavy metal transport/detoxification superfamily protein (.1) AT5G37860 63 / 1e-11 Heavy metal transport/detoxification superfamily protein (.1) AT3G05220 64 / 2e-11 Heavy metal transport/detoxification superfamily protein (.1.2) AT4G35060 61 / 2e-11 HIPP25 heavy metal associated isoprenylated plant protein 25, Heavy metal transport/detoxification superfamily protein (.1) AT1G71050 60 / 3e-11 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G132000 [exp] 84 / 4e-19 AT5G27690 114 / 4e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G206900 [exp] 84 / 5e-19 AT5G27690 111 / 3e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G024700 [exp] 76 / 4e-16 AT5G27690 114 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G202800 [exp] 71 / 5e-14 AT3G06130 150 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.010G114300 [exp] 71 / 6e-14 AT1G23000 128 / 2e-33 Heavy metal transport/detoxification superfamily protein (.1) Potri.013G017700 [exp] 70 / 1e-13 AT5G27690 115 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G128400 [exp] 69 / 2e-13 AT1G23000 137 / 1e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G026100 [exp] 67 / 5e-13 AT5G27690 100 / 3e-24 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G175400 [exp] 61 / 1e-11 AT4G38580 254 / 2e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041228 [exp] 76 / 8e-16 AT3G06130 149 / 3e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10031495 [exp] 74 / 5e-15 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10015174 [exp] 72 / 2e-14 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10029942 [exp] 71 / 8e-14 AT5G19090 125 / 1e-31 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10032445 [exp] 70 / 1e-13 AT1G23000 129 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1) Lus10004465 [exp] 69 / 4e-13 AT5G19090 122 / 2e-30 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10013911 [exp] 66 / 5e-13 AT1G06330 103 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10001892 [exp] 65 / 6e-13 AT1G06330 101 / 1e-27 Heavy metal transport/detoxification superfamily protein (.1) Lus10031514 [exp] 67 / 1e-12 AT5G19090 118 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10014120 [exp] 58 / 2e-10 AT4G38580 253 / 5e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.014G140600.1 pacid=42763757 polypeptide=Potri.014G140600.1.p locus=Potri.014G140600 ID=Potri.014G140600.1.v4.1 annot-version=v4.1 ATGGCTAAGGAAGCAGAATTGAAGAAGATTGAGCTCAAGGTATCTGTCAACTGCTGTGATGGCTGCAAGAGGAAAGTTAAAAAGGCCTTGCAAGGTGTTG AAGGTGTTCTGAAGACCGAAATCGATCCACAGCATCCCAAGGTGACGGTCCTGGGAAATGTGAATCCACAAATTTTAATCAAAAGACTCTTGAAAACTGG AAAACAAGCAGAACTGTGGAGTAGTGGGAATCAGAATGCGGGAAAAGAAAAGAAAGAAGCGGATATGCTGGTTGAAAAAGAGAAAGACAAGTCAAAATCT GAGTGTGAGCAAACAAAGTCTTCAGATTCATGTGTCAAGGTAACTGACAAGAACAGAGAGACTAAAAATGGTGGGGATGGAGGTGAGAATAAAGCTTCAA AGGACTGTAATGAGACAGACGTCAGTGTTAAGTCTAGTAATCCTGAAGTGGTTAGAAGTGAAAATCCTGTCCCCCCACATCCAGAAGTCGGCAATTTCAG GACTTACAATCAATATTGTTACAAGGTTGAGCCTTACGCAATTGCACTTCCCTTTTATGCCATTCCTTCATACACTGTTCCTCCTGTCAACCCCACAGGT TATGGTCAGGAATACCTCCTTTACGAGAGGCCAGTATTTCAACCACCAGTCCAGGCGCCAACAGCAAGAGTTGAGGATTACTTCAGCGATGAAAATACTG TGGGATGCCATGTGATGTGA
AA sequence Show only first row Show all	>Potri.014G140600.1 pacid=42763757 polypeptide=Potri.014G140600.1.p locus=Potri.014G140600 ID=Potri.014G140600.1.v4.1 annot-version=v4.1 MAKEAELKKIELKVSVNCCDGCKRKVKKALQGVEGVLKTEIDPQHPKVTVLGNVNPQILIKRLLKTGKQAELWSSGNQNAGKEKKEADMLVEKEKDKSKS ECEQTKSSDSCVKVTDKNRETKNGGDGGENKASKDCNETDVSVKSSNPEVVRSENPVPPHPEVGNFRTYNQYCYKVEPYAIALPFYAIPSYTVPPVNPTG YGQEYLLYERPVFQPPVQAPTARVEDYFSDENTVGCHVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19090			Heavy metal transport/detoxifi...		Potri.014G140600 [exp]	0	1
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.001G448100 [exp]	1.41	0.9647
AT5G49100			unknown protein		Potri.010G012000 [exp]	6.00	0.9604
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.016G143833 [exp]	9.53	0.9540
AT3G50180			Plant protein of unknown funct...		Potri.016G039866 [exp]	13.41	0.9548
AT2G37460			nodulin MtN21 /EamA-like trans...		Potri.006G082700 [exp]	15.81	0.9567
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.015G031600 [exp]	17.66	0.9425
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Potri.011G062000 [exp]	19.26	0.9425
AT4G31980			unknown protein		Potri.003G207900 [exp]	20.97	0.9313
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G117050 [exp]	22.13	0.9462
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Potri.011G115400 [exp]	25.88	0.9275

Compare expression of checked genes

Potri.014G140600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.