Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12910 677 / 0 LWD1, ATAN11 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) AT3G26640 634 / 0 LWD2 LIGHT-REGULATED WD 2, Transducin/WD40 repeat-like superfamily protein (.1) AT5G24520 444 / 3e-157 ATTTG1, URM23, TTG1 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT1G29260 63 / 7e-11 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT4G35050 63 / 8e-11 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G16780 62 / 2e-10 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT1G18830 60 / 1e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35370 54 / 8e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT2G19540 54 / 1e-07 Transducin family protein / WD-40 repeat family protein (.1) AT1G53090 53 / 2e-07 SPA4 SPA1-related 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G220500 [exp] 712 / 0 AT1G12910 679 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G002600 [exp] 426 / 6e-150 AT5G24520 565 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.012G006100 [exp] 424 / 3e-149 AT5G24520 577 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.006G209000 [exp] 396 / 2e-138 AT1G12910 391 / 3e-136 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.016G075800 [exp] 368 / 4e-127 AT1G12910 345 / 2e-118 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G066600 [exp] 64 / 1e-11 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.004G057600 [exp] 63 / 6e-11 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.009G135100 [exp] 58 / 3e-09 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 56 / 2e-08 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041500 [exp] 659 / 0 AT1G12910 641 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012593 [exp] 468 / 7e-168 AT1G12910 458 / 2e-164 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023228 [exp] 385 / 6e-134 AT5G24520 505 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10007274 [exp] 66 / 6e-12 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10029221 [exp] 67 / 7e-12 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10027848 [exp] 59 / 2e-09 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10005074 [exp] 59 / 2e-09 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10016373 [exp] 50 / 2e-06 AT3G63460 1299 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10024403 [exp] 50 / 2e-06 AT2G19540 659 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10039578 [exp] 50 / 2e-06 AT3G63460 1380 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.014G140700.1 pacid=42763490 polypeptide=Potri.014G140700.1.p locus=Potri.014G140700 ID=Potri.014G140700.1.v4.1 annot-version=v4.1 ATGGGAGCTAGCAGCGACCCGAATCAAGACGGGTCGGACGAGCAACAAAAACGATCTGAGATCTACACATACGAGGCACCATGGCACATCTACGCTATGA ACTGGAGCGTCCGCCGTGACAAGAAGTACCGCCTTGCCATCGCCAGCCTCCTAGAACAGTACCCAAACCGGGTCGAGATTGTTCAGCTGGATGACTCCAA CGGAGAGATCCGATCCGACCCGAACCTGTCCTTCGAGCACCCTTATCCACCTACGAAGACCATTTTCATTCCAGACAAGGAGTGCCAAAAACCTGACCTC CTCGCAACGTCCAGCGACTTCCTGCGCGTGTGGCGCATAAACGATGAACAGCCGCGCGTGGAGCTCAAAAGCCTGTTAAACGGCAACAAGAACAGCGAGT TTTGCGGGCCTTTGACTTCCTTTGACTGGAACGAGGCGGAGCCTAGGCGAATTGGGACATCCAGCATCGACACGACATGCACCATCTGGGATATCGAGAA GGAGACTGTTGATACACAGTTAATCGCTCACGACAAGGAGGTATACGACATCGCATGGGGTGGTGTTGGGGTTTTCGCTTCGGTTTCAGCAGACGGGTCG GTTAGGGTTTTCGATTTACGGGATAAGGAGCATTCGACGATAATCTACGAGAGTTCGGAGCCCGACACGCCTTTGGTGAGACTAGGTTGGAACAAGCAGG ATCCGAGGTACATGGCGACGATCATCATGGACAGTGCTAAGGTTGTGGTGTTGGATATTCGCTTCCCAACTCTTCCAGTGGTGGAATTGCAGAGGCATCA TGCTAGTGTTAATGCTGTTGCTTGGGCCCCTCATAGTTCTTGCCACATTTGTACTGCTGGGGATGATTCACAGGCATTGATTTGGGATCTTTCTTCGATG GGTCAGCCTGTTGAGGGTGGATTGGACCCCATTCTTGCTTACACTGCTGGTGCTGAAATCGAGCAGCTGCAGTGGTCGTCTTCGCAGCCTGATTGGGTTG CTATTGCTTTCTCTACCAAGCTTCAAATTCTCAGGGTTTGA
AA sequence Show only first row Show all	>Potri.014G140700.1 pacid=42763490 polypeptide=Potri.014G140700.1.p locus=Potri.014G140700 ID=Potri.014G140700.1.v4.1 annot-version=v4.1 MGASSDPNQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSNGEIRSDPNLSFEHPYPPTKTIFIPDKECQKPDL LATSSDFLRVWRINDEQPRVELKSLLNGNKNSEFCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGS VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHHASVNAVAWAPHSSCHICTAGDDSQALIWDLSSM GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.014G140700 [exp]	0	1
AT1G15270			Translation machinery associat...		Potri.001G181800 [exp]	4.00	0.7993
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024600 [exp]	4.24	0.7921	HSP1.1
AT1G51060		HTA10	histone H2A 10 (.1)		Potri.001G415700 [exp]	8.48	0.7817	HTA903
AT5G18200			UTP:galactose-1-phosphate urid...		Potri.019G034400 [exp]	10.58	0.7846
AT5G24520		ATTTG1, URM23, ...	UNARMED 23, TRANSPARENT TESTA ...		Potri.015G002600 [exp]	13.67	0.7640
AT2G40070			unknown protein		Potri.016G114900 [exp]	17.74	0.7398
AT5G13090			unknown protein		Potri.003G168500 [exp]	19.89	0.7457
AT5G40490			RNA-binding (RRM/RBD/RNP motif...		Potri.001G344900 [exp]	22.95	0.7472
AT5G41390			PLAC8 family protein (.1.2)		Potri.014G087600 [exp]	23.87	0.7435
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.007G140300 [exp]	26.38	0.7875	ZOG1.10

Compare expression of checked genes

Potri.014G140700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.