Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36880 1190 / 0 ACS acetyl-CoA synthetase (.1.2) AT5G23050 145 / 4e-36 AAE17 acyl-activating enzyme 17 (.1) AT1G55320 130 / 2e-31 AAE18 acyl-activating enzyme 18 (.1.2) AT5G38120 115 / 7e-27 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT3G48990 109 / 6e-25 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 109 / 7e-25 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 108 / 2e-24 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 100 / 9e-22 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20480 96 / 3e-20 AMP-dependent synthetase and ligase family protein (.1) AT3G16170 94 / 8e-20 AAE13 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G056000 [exp] 130 / 3e-31 AT5G23050 1054 / 0.0 acyl-activating enzyme 17 (.1) Potri.017G112800 [exp] 115 / 1e-26 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G006600 [exp] 115 / 2e-26 AT1G55320 1041 / 0.0 acyl-activating enzyme 18 (.1.2) Potri.005G248500 [exp] 112 / 1e-25 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.004G102000 [exp] 111 / 2e-25 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G144700 [exp] 108 / 1e-24 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G006700 [exp] 109 / 2e-24 AT1G55320 1078 / 0.0 acyl-activating enzyme 18 (.1.2) Potri.002G012800 [exp] 106 / 8e-24 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.001G105900 [exp] 97 / 5e-21 AT3G48990 750 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012595 [exp] 1222 / 0 AT5G36880 1246 / 0.0 acetyl-CoA synthetase (.1.2) Lus10041499 [exp] 1222 / 0 AT5G36880 1241 / 0.0 acetyl-CoA synthetase (.1.2) Lus10038966 [exp] 146 / 2e-36 AT5G23050 1043 / 0.0 acyl-activating enzyme 17 (.1) Lus10027257 [exp] 144 / 3e-35 AT5G23050 1044 / 0.0 acyl-activating enzyme 17 (.1) Lus10013831 [exp] 128 / 7e-31 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 117 / 3e-27 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 113 / 5e-26 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 112 / 2e-25 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 110 / 6e-25 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10034997 [exp] 110 / 1e-24 AT1G55320 1003 / 0.0 acyl-activating enzyme 18 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain CL0378 [poplar] [flax] ANL PF16177 [poplar] [flax] ACAS_N Acetyl-coenzyme A synthetase N-terminus
Representative CDS sequence Show only first row Show all	>Potri.014G140900.6 pacid=42764087 polypeptide=Potri.014G140900.6.p locus=Potri.014G140900 ID=Potri.014G140900.6.v4.1 annot-version=v4.1 ATGCAGACTCCGGTGTCAAACAGCAAATTCGTTGGAAGTCGAGTTCCCTTCTTGTTTCTGAATAATAAACAATCACCAGACAGAAGAATCACCTCCATCT CTACCTCCTGTGTTTGCTCAATTTGGAATAATTATCACTACAAGAGGAGGACTCGGATGGCGACGGATAATAAGCTGAGGCACGTGACATCAATGCTGGA GTTGCCGTCTGGAGCCGGCAAGTTTTCTGCCCTCCACGCCGTTATATTAGGAGAAGCACTTGCTTCTGAAGAGAACGATCTTATCTTTCCTAGCGATGAT TTCGCTCGTCAAGCTCATGTTTCCTCTCCTCAACAGTACTTGGAGATGTACAAAAGGTCCGTTGAAGATCCGGCTGGTTTTTGGTCCGATATTGCTTCTC AGTTCTATTGGAAAAAGAAATGGGATCAACCTGCTTGCTCTGAGAATTTTGACTTTCGCAAAGGCAATATCAGTATTCAGTGGTTCAAGGGAGGCTTGAC CAACATTTGCTACAACTGTTTAGACAGAAATATTGAATCAGGAAATGCTGATAAGATTGCCATTTATTGGGAAGGCAATGATCCTGGTTTGGAAGACAGT TTAACCTACTCCCAGCTCCTCGACAGAGTTTGCCAGCTATCAAATTACTTGAAAGATGTTGGTGTTAAGAAGGGCGATGCTGTTGTTATTTATTTACCAA TGCTCATGGAGCTCCCCATTGCCATGCTCGCTTGTGCCCGTATTGGTGCTGTTCACTCGGTTGTATTTGCAGGATTTTCTTCAGAATCTCTTGCTCAGAG AATCGTAGACTGCAAACCAAAAGTTGTGATTACTTGTAATGCTGTCAAAAGAGGTGCCAAGGCTATACACCTTAAAGACATTGTTGATGCCGCCCTTGCT GAATCTGCAAAAAATGGAATATCTGTAGATGTATGCCTAACTTATGAAAACGAAAATGCCATGAAGAGGGAAGGCACTAAATGGCAGGAGGGAAGAGATG TCTGGTGGCAGGACTTTGTCCCCAAGTATCCTACTACTTGTGAGGTGGAGTGGGTTGATGCAGAGGATCCCCTTTTTCTGCTATATACTAGTGGAAGCAC AGGAAAGCCAAAGGGAGTTCTTCATACAACGGGAGGATACATGGTTTACTCTGCAACAACATTCAAGTATGCTTTTGATTACAAACCATCTGACGTCTAC TGGTGCACAGCTGATTGTGGTTGGATCACCGGGCATAGCTATGTGACTTACGGACCCATGCTTAATGGAGCATCTGTTGTCGTATTTGAAGGGACTCCAA CTTATCCTGATGCTGGGCGATGTTGGGATATTGTTGACAAATTTAAGGTGACAATATTCTACACTGCCCCTACCCTGGTGCGCTCCCTGATGCGTGAGAG TGATAAGTTTGTTACTCGCTATTCACGCAAGTCCTTACGCGTCCTTGGAAGTGTAGGCGAGCCCATTAACCCAAGTGCATGGAGGTGGTTTTTCAATGTA GTTGGAGACTCACGGTGCCCTATATCTGACACTTGGTGGCAAACTGAAACTGGTGGTTTCATGATTACTCCACTACCAGGTGCCTGGCCACAGAAGCCTG GTTCTGCTACTTTCCCTTTCTTTGGTGTTCAGCCTGTCATTGTTGATGAGAAGGGTGTTGAGATTGAAGGAGAGTGCAGTGGGTATTTGTGTTTAAAAAG CTCATGGCCTGGTGCATTCCGAACTCTTTATGGGGATCATGAACGATATGAAACCACGTACTTCAAGCCATTTGCTGGCTATTATTTTACTGGTGACGGC TGTAGCAGGGACAAAGATGGATACCACTGGCTAACCGGAAGAGTTGATGATGTCATCAATGTGAGTGGTCATCGTATTGGAACTGCTGAAGTTGAATCTG CTCTTGTTTCACATCCAAAATGTGCAGAAGCTGCTGTGGTTGGTGTTGAGCATGAGGTTAAAGGACAGGGGATTTATGCCTTCGTTACCCTTGTGGAAGG TGAACCTTACAGCGAAGAACTTCGGAAAAGTCTTATACTCACAGTGCGGAAGCAGATAGGAGCATTTGCAGCACCTGATAAAATTCACTGGGCTCCTGGC CTTCCAAAGACAAGGAGTGGAAAGATAATGAGGAGAATTTTGAGGAAAATTGCTTCCAAGCAGTTAGATGAACTCGGAGACACCAGCACACTTGCGGAAC CACATGTGGTGGAGCAACTCATAGAACTTGCTGATTGCTGA
AA sequence Show only first row Show all	>Potri.014G140900.6 pacid=42764087 polypeptide=Potri.014G140900.6.p locus=Potri.014G140900 ID=Potri.014G140900.6.v4.1 annot-version=v4.1 MQTPVSNSKFVGSRVPFLFLNNKQSPDRRITSISTSCVCSIWNNYHYKRRTRMATDNKLRHVTSMLELPSGAGKFSALHAVILGEALASEENDLIFPSDD FARQAHVSSPQQYLEMYKRSVEDPAGFWSDIASQFYWKKKWDQPACSENFDFRKGNISIQWFKGGLTNICYNCLDRNIESGNADKIAIYWEGNDPGLEDS LTYSQLLDRVCQLSNYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSSESLAQRIVDCKPKVVITCNAVKRGAKAIHLKDIVDAALA ESAKNGISVDVCLTYENENAMKREGTKWQEGRDVWWQDFVPKYPTTCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYSATTFKYAFDYKPSDVY WCTADCGWITGHSYVTYGPMLNGASVVVFEGTPTYPDAGRCWDIVDKFKVTIFYTAPTLVRSLMRESDKFVTRYSRKSLRVLGSVGEPINPSAWRWFFNV VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCLKSSWPGAFRTLYGDHERYETTYFKPFAGYYFTGDG CSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPKCAEAAVVGVEHEVKGQGIYAFVTLVEGEPYSEELRKSLILTVRKQIGAFAAPDKIHWAPG LPKTRSGKIMRRILRKIASKQLDELGDTSTLAEPHVVEQLIELADC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Potri.014G140900 [exp]	0	1
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.018G072700 [exp]	40.17	0.7266
AT2G34590			Transketolase family protein (...		Potri.017G076500 [exp]	48.16	0.7214	PDH.1
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.004G160100 [exp]	52.91	0.7584	Pt-PAP.2
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.009G055000 [exp]	123.64	0.7578

Compare expression of checked genes

Potri.014G140900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.