Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26618 841 / 0 ERF1-3 eukaryotic release factor 1-3 (.1) AT1G12920 831 / 0 ERF1-2 eukaryotic release factor 1-2 (.1) AT5G47880 796 / 0 ERF1-1 eukaryotic release factor 1-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G159000 [exp] 865 / 0 AT3G26618 785 / 0.0 eukaryotic release factor 1-3 (.1) Potri.001G072000 [exp] 858 / 0 AT3G26618 793 / 0.0 eukaryotic release factor 1-3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032447 [exp] 852 / 0 AT3G26618 843 / 0.0 eukaryotic release factor 1-3 (.1) Lus10042947 [exp] 848 / 0 AT3G26618 839 / 0.0 eukaryotic release factor 1-3 (.1) Lus10014295 [exp] 823 / 0 AT1G12920 811 / 0.0 eukaryotic release factor 1-2 (.1) Lus10026003 [exp] 819 / 0 AT1G12920 808 / 0.0 eukaryotic release factor 1-2 (.1) Lus10028312 [exp] 805 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10038236 [exp] 805 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10025863 [exp] 805 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10041760 [exp] 789 / 0 AT1G12920 783 / 0.0 eukaryotic release factor 1-2 (.1) Lus10031479 [exp] 180 / 2e-53 AT5G47880 192 / 4e-58 eukaryotic release factor 1-1 (.1.2) Lus10028313 [exp] 172 / 3e-52 AT1G12920 171 / 2e-52 eukaryotic release factor 1-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [poplar] [flax] S11_L18p PF03463 [poplar] [flax] eRF1_1 eRF1 domain 1 CL0267 [poplar] [flax] S11_L18p PF03464 [poplar] [flax] eRF1_2 eRF1 domain 2 CL0101 [poplar] [flax] PELOTA PF03465 [poplar] [flax] eRF1_3 eRF1 domain 3
Representative CDS sequence Show only first row Show all	>Potri.014G141000.2 pacid=42762443 polypeptide=Potri.014G141000.2.p locus=Potri.014G141000 ID=Potri.014G141000.2.v4.1 annot-version=v4.1 ATGGCTGATGGTCATGAGTCGGACAAGAATATTGAGATATGGAAAATCAAAAAGTTGATTAAGGCATTGGAGTCTGCAAGGGGTAATGGCACGAGCATGA TATCTCTTATAATGCCTCCTCGTGATCAAATATCTCGGGTCACAAAGATGTTAGGTGATGAATTTGGAACTGCTTCAAACATTAAAAGTAGGGTCAACCG CCAGTCTGTCTTGGGTGCCATCACATCTGCTCAGCAGAGGCTGAAGCTTTATAACAAGGTTCCGCCGAATGGGCTGGTGCTTTATACGGGAACAATTGTT ACTGAAGATGGAAAAGAGAAGAAGGTGACAATTGATTTTGAACCTTTCAAACCTATAAACGCATCATTGTACCTCTGTGACAACAAGTTTCACACAGAAG CACTCAATGAGCTCTTAGAGTCTGATGACAAGTTTGGTTTTATTGTCATGGATGGGAACGGCACCTTATTTGGGACACTGAGTGGAAACACACGAGAAGT GCTCCATAAATTTACTGTTGATTTGCCAAAGAAGCACGGAAGAGGAGGGCAGTCTGCTCTGCGGTTTGCTCGACTTCGGATGGAAAAACGGCACAACTAT GTGAGGAAAACTGCAGAGCTTGCCACCCAGTTCTTCATTAATCCTGCTACCAGTCAGCCCAATGTTGCTGGGTTGATACTAGCTGGTTCAGCTGACTTCA AGACTGAGCTCAGCCAGTCAGATATGTTTGACCCAAGGTTGCAAGCCAAGATATTGAACGTGGTTGATGTTTCATATGGTGGAGAAAATGGTTTCAACCA AGCTATTGAGCTGTCAGCTGAGATTCTATCAAATGTGAAGTTTATACAGGAAAAACGTTTGATAGGGAAATACTTTGAGGAGATCAGCCAGGATACTGGG AAGTATGTCTTTGGTGTTGATGATACATTGAAGGCTCTGGAAATGGGTGCTGTCGAAATCCTTATCGTGTGGGAAAATCTAGATATCAATAGGTACACGC TGAAAAACAGTGCTACAGGAGAAATTATCATAAAGCACTTGAACAAGGACCAAGAGGCTGATCAGAATAACTTTCGGGATTCAGCCACTGCTGCAGAGTT GGAGGTTCAGGAGAAGATGCCCTTGCTTGAGTGGTTTGCCAATGAGTACAAGCGATTTGGTTGTACACTTGAATTCGTCACCAATAAATCACAAGAGGGA TCGCAGTTTTGCAGGGGGTTTGGTGGAATTGGCGGTATTCTTCGCTACCAGCTTGACATGCGATCATTTGATGAGTTGTCCGATGGAGAAGTTTATGAGG ATTCCGATTAG
AA sequence Show only first row Show all	>Potri.014G141000.2 pacid=42762443 polypeptide=Potri.014G141000.2.p locus=Potri.014G141000 ID=Potri.014G141000.2.v4.1 annot-version=v4.1 MADGHESDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIV TEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNY VRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTG KYVFGVDDTLKALEMGAVEILIVWENLDINRYTLKNSATGEIIIKHLNKDQEADQNNFRDSATAAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEG SQFCRGFGGIGGILRYQLDMRSFDELSDGEVYEDSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Potri.014G141000 [exp]	0	1
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.014G020600 [exp]	24.71	0.7928
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.011G130850 [exp]	32.77	0.7992
AT5G08240			unknown protein		Potri.005G092400 [exp]	37.41	0.7986
AT5G53900			Serine/threonine-protein kinas...		Potri.001G397800 [exp]	50.75	0.7735
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Potri.005G032300 [exp]	54.60	0.7794
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.011G130800 [exp]	56.24	0.7928	CYP71D38-2
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Potri.016G110500 [exp]	56.78	0.7401	Pt-CAC3.2
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.014G125300 [exp]	60.79	0.7704
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.001G147400 [exp]	81.38	0.7481
AT1G02930		ATGST1, GST1, E...	EARLY RESPONSIVE TO DEHYDRATIO...		Potri.002G207093 [exp]	84.42	0.7813

Compare expression of checked genes

Potri.014G141000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.