Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12930 1258 / 0 ARM repeat superfamily protein (.1) AT5G62600 132 / 5e-31 MOS14 modifier of snc1-1, 14, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G068600 [exp] 151 / 5e-37 AT5G62600 1454 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Potri.012G073600 [exp] 142 / 3e-34 AT5G62600 1450 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012590 [exp] 1457 / 0 AT1G12930 1148 / 0.0 ARM repeat superfamily protein (.1) Lus10041503 [exp] 746 / 0 AT1G12930 558 / 0.0 ARM repeat superfamily protein (.1) Lus10004250 [exp] 135 / 3e-32 AT5G62600 1296 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Lus10042159 [exp] 87 / 7e-17 AT5G62600 1352 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08389 [poplar] [flax] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Potri.014G141100.1 pacid=42764278 polypeptide=Potri.014G141100.1.p locus=Potri.014G141100 ID=Potri.014G141100.1.v4.1 annot-version=v4.1 ATGGACCTGCAAATGAAAGTAGCCCAGGCGGTTCATGTCTTGAATCACGATACCCAATCCTGCAACCGCGTCGCTGCCAATCAATGGCTCGTTCAGTTCC AGCAGACCGACGCCGTTTGGGAGGTCGCCACTTCCATTCTCACCTCCGATCATCTCCACCTTCAGCAGCAGACGCCGCCGCCGCCTTTTGTCTCCGATTT AGAAGTCGAGTTCTTCGCGGCACAGATTCTCAAACGAAAGATCCAAAGTGAAGGCCATTCTTTGCAGTTAGGAGTTAAAGATGCTTTGTTAAATGCTCTT CTCGTGGCTGCCAAAAGATTCAGTTCAGGTCCTCCCCAGCTTTTAACACAAATCTGCCTTGCACTTGCTGCCCTTATGCTTTGTGCCGTTGAGCATGGAA AACCTATCGAGCAGCTTTTCTACAGTCTTCGGACTCTGCAGAGCCAGGATGATGGTAATGTTGCTGTGCTGGAGATGCTCACTGTTCTTCCTGAAGAAGT TGTTGACACTCAAAATACTGATTGTAGAGTAAGTCCAGCCCATAGAAGTCAGTATGGCCGAGAGCTTCTCTCACATACTCCTATGGTTCTTGAGTTTCTA CTGGAGCAATCTCAGAAAATTTCCGATGGTGGTGTTCAACTGCATGAAAGAAACAGGAAAGTTCTCCGTTGCTTATTGAGCTGGGTACGAGCTGGCTGCT TCTCAGAAATTCCTCGAGACTCATTGCCAACGCATCCACTTCTTAATTTTGTGTTCAACTCTTTGCAGGTTCCATCTTCATTTGATCTGGCTATTGAAGT CCTTGTTGAACTTGCAAGTAGACATGAGGGGCTACCTCAGGTTTTGTTATCCAGAGTACATTTTCTCAAAGAGGTGCTTCTTATTTCAGCTCTTAGCAGC AGAGATGAGAAAGTGATTAGTGGGCTTTCATGCTTGATGTCAGAAATTGGGCAGGCAACACCTTCTCTGATCGTAGAGGCAAGTGTTGAGGGCCTTGCAC TTGCAGATGCTTTATTGAGCTGTGTGGCATTTCCAAGTGAAGACTGGGAGATTGCAGACTCAACATTGCAATTTTGGTCTAGTCTTGCAAGCTATATACT TGGTCTTGACGCAGAAGGTGCAAAAAATAGGAAACATTCTGAAGACATGTTGTTTTCTGTATTTTCAGCATTGTTGGATGCTCTTTTATTGCGCGCTCAG GTTGACGAATCTACATTCATTGATGAGAGTGAAACAGTTGATTTGCCTGATGGTCTTGCGCATTTCAGGATGAATCTTGTTGAACTTTTGGTGGATATTT GTCAGCTTCTAAAACCTACAAGATTTGTACAAAAGCTTTTCTTTGGTGGTTGGGCATCACCAAATGTATCAATACCTTGGAAGGAAGTTGAAACCAAACT GTTTGCTCTTAATGTGGTCTCTGAATTGATTCTACAAGAGAGCCAGGTCTTCGACTTCTCGGTGATTATGCAGTTGGTGACAATCTTTTCCAGTATCCCT CCCAACAAGCTTAAGGGATTTATGTGCATTGTATACAGGTCACTCGCAGATGTTGTTGGTTCCTATTCCAAGTGGATTTCTACATTTCAAACTATCGCTA GGCCTTTACTATTATTTCTTGCTGCGGGCATTTCAGAGCCCCAGTCCTCAAATGCTTGTGCCTCCGCCCTGCGCAAATTTTGTGAAGATGCTTCTACAGT TATTTATGAACCTGCAAATCTGGAAGTTTTGATGTGGATAGGAGAGGCTTTGGAGAAGAGGCAATTACCTTTGGAAGATGAGGAGGAGGTAGTTAGCGCG ATAAGTATGATCCTTGGTTCTGTAACAAACAAAGAGCAAAAGAACAGCCTGTTGGCTAGGCTGCTTTCTTCTTGCTATGAAGCTATAGGGAAACTGGTTA ATGAAGGCAGCAGCGATTCATTCAGACAAAATCCAGCTGCTTATACGCAAATTTTGAACTCAGCAGCAAGAGGGTTATACAGGATGGGAACTGTATTTAG TCATCTTGTAATGCCTCATCCTAGTGGTCCTGCTGCTGATGATCCTATATTTGGTCTGCTAAGCACCTTTTGGCCCATGTTAGAGAAACTACTTAGGTCT GAACACATGGAGAATAGTAATTTATCTACCGCAGCTTGCCGAGCTCTTTCACTGGCAATTCAGTCGAGCGGGCAGCACTTTGCTTTGCTATTGCCCAGTG TACTAGATTGCCTATCAACCAATTTTTTGTCATTCCAGAGTCATGAATGGTATATCAGAACAGCTTCTGTTGTCATTGAAGAATTCAGTCATAAAGAGGA ATTTGGACCTTTGTTTGTCATTACTTTTGAAAGATTTACACAAGCAACATCAGTTATGGGTCTTAATTCTTCATATATATGTGACCAAGAGCCTGATTTA GTGGAGGCTTACACAAATTTTGCTTCCACTGTGGTGCGTGGTACTCATAAGGAAGTATTAGCTGCATCTGGTTCTCTCCTTGACGTTTCCTTTCAAAAGG CAGCTATATGCTGCACTGCTATGCATCGAGGAGCGGCGCTGGCAGCAATGTCATATTTGTCATGCTTCTTGGAAGTTGGCCTAATCTCTTTGTTGGAATC CAAGAATTGTATTCTCGAGGGGTCATACAGTGCCATATCAATTCAGGTCATATCTCGTAATGGCGAGGGACTTGTATCAAATTTAGTGTATGCTTTGCTC GGCGTTTCAGCAATGTCACGGGTTCACAAATGTGCAACAATCTTGCAACAGGTGGCTTCATTTTGCAGTTTAAGTGAGACAACAACTTGGAAGGTTGTTC TGTGTTGGGAGTCTTTGCATGGATGGCTACATGCAGCGGTGCAGGCTCTTCCAGTTGAGTATCTAAAGCAGGGGGAAGCTGAAACATTAGTACCAGTTTG GATGGAGGCCCTCGTTGGTGCTGCTTCTGATTATCTTGGGAGCAAGACTTTCAATGGGGAAAAGAATAACTATGGGCATATGCAAGGAAAGGGAGGAAGA GTTTTGAAGCGCATAATTCGAGAATTCGCTGATAGCCACCGCAACGTCCCCAATTTGACCTAA
AA sequence Show only first row Show all	>Potri.014G141100.1 pacid=42764278 polypeptide=Potri.014G141100.1.p locus=Potri.014G141100 ID=Potri.014G141100.1.v4.1 annot-version=v4.1 MDLQMKVAQAVHVLNHDTQSCNRVAANQWLVQFQQTDAVWEVATSILTSDHLHLQQQTPPPPFVSDLEVEFFAAQILKRKIQSEGHSLQLGVKDALLNAL LVAAKRFSSGPPQLLTQICLALAALMLCAVEHGKPIEQLFYSLRTLQSQDDGNVAVLEMLTVLPEEVVDTQNTDCRVSPAHRSQYGRELLSHTPMVLEFL LEQSQKISDGGVQLHERNRKVLRCLLSWVRAGCFSEIPRDSLPTHPLLNFVFNSLQVPSSFDLAIEVLVELASRHEGLPQVLLSRVHFLKEVLLISALSS RDEKVISGLSCLMSEIGQATPSLIVEASVEGLALADALLSCVAFPSEDWEIADSTLQFWSSLASYILGLDAEGAKNRKHSEDMLFSVFSALLDALLLRAQ VDESTFIDESETVDLPDGLAHFRMNLVELLVDICQLLKPTRFVQKLFFGGWASPNVSIPWKEVETKLFALNVVSELILQESQVFDFSVIMQLVTIFSSIP PNKLKGFMCIVYRSLADVVGSYSKWISTFQTIARPLLLFLAAGISEPQSSNACASALRKFCEDASTVIYEPANLEVLMWIGEALEKRQLPLEDEEEVVSA ISMILGSVTNKEQKNSLLARLLSSCYEAIGKLVNEGSSDSFRQNPAAYTQILNSAARGLYRMGTVFSHLVMPHPSGPAADDPIFGLLSTFWPMLEKLLRS EHMENSNLSTAACRALSLAIQSSGQHFALLLPSVLDCLSTNFLSFQSHEWYIRTASVVIEEFSHKEEFGPLFVITFERFTQATSVMGLNSSYICDQEPDL VEAYTNFASTVVRGTHKEVLAASGSLLDVSFQKAAICCTAMHRGAALAAMSYLSCFLEVGLISLLESKNCILEGSYSAISIQVISRNGEGLVSNLVYALL GVSAMSRVHKCATILQQVASFCSLSETTTWKVVLCWESLHGWLHAAVQALPVEYLKQGEAETLVPVWMEALVGAASDYLGSKTFNGEKNNYGHMQGKGGR VLKRIIREFADSHRNVPNLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12930			ARM repeat superfamily protein...		Potri.014G141100 [exp]	0	1
AT4G39370		UBP27	ubiquitin-specific protease 27...		Potri.007G077100 [exp]	2.00	0.8252	Pt-UBP27.1
AT4G20310			Peptidase M50 family protein (...		Potri.003G157800 [exp]	2.44	0.8370
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.008G025800 [exp]	2.82	0.8077
AT1G60200			splicing factor PWI domain-con...		Potri.008G147100 [exp]	3.00	0.8313
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	3.16	0.8373
AT2G01460			P-loop containing nucleoside t...		Potri.008G130200 [exp]	6.70	0.8251
AT1G76460			RNA-binding (RRM/RBD/RNP motif...		Potri.005G256700 [exp]	6.92	0.7564
AT5G22010		ATRFC1	replication factor C 1, replic...		Potri.001G213900 [exp]	7.48	0.8093
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Potri.002G213300 [exp]	8.24	0.7452	Pt-PP1.5
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G150100 [exp]	8.36	0.7762

Compare expression of checked genes

Potri.014G141100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.