Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ACD32.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06460 165 / 2e-49 ACD31.2, ACD32.1 ALPHA-CRYSTALLIN DOMAIN 31.2, alpha-crystallin domain 32.1 (.1) AT1G07400 50 / 2e-07 HSP20-like chaperones superfamily protein (.1) AT1G53540 47 / 3e-06 HSP20-like chaperones superfamily protein (.1) AT1G59860 44 / 2e-05 HSP20-like chaperones superfamily protein (.1) AT5G12020 42 / 0.0001 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT5G12030 41 / 0.0002 AT-HSP17.6A heat shock protein 17.6A (.1) AT5G37670 40 / 0.0006 HSP15.7CI HSP20-like chaperones superfamily protein (.1) AT4G27670 40 / 0.0007 HSP21 heat shock protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G148000 [exp] 47 / 1e-06 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 45 / 8e-06 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 45 / 1e-05 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.017G130700 [exp] 44 / 1e-05 AT5G37670 160 / 1e-51 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 44 / 1e-05 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 44 / 2e-05 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) Potri.010G175200 [exp] 42 / 8e-05 AT1G53540 107 / 5e-30 HSP20-like chaperones superfamily protein (.1) Potri.004G187202 [exp] 42 / 9e-05 AT2G29500 209 / 1e-70 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 42 / 0.0001 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020785 [exp] 155 / 1e-45 AT1G06460 155 / 1e-45 ALPHA-CRYSTALLIN DOMAIN 31.2, alpha-crystallin domain 32.1 (.1) Lus10007366 [exp] 145 / 1e-41 AT1G06460 149 / 3e-43 ALPHA-CRYSTALLIN DOMAIN 31.2, alpha-crystallin domain 32.1 (.1) Lus10023653 [exp] 50 / 4e-07 AT1G52560 210 / 5e-68 HSP20-like chaperones superfamily protein (.1.2) Lus10026262 [exp] 48 / 2e-06 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 47 / 4e-06 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10000932 [exp] 43 / 7e-05 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1) Lus10004039 [exp] 40 / 0.0003 AT5G37670 150 / 3e-48 HSP20-like chaperones superfamily protein (.1) Lus10031154 [exp] 40 / 0.0006 AT4G25200 224 / 1e-74 mitochondrion-localized small heat shock protein 23.6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF00011 [poplar] [flax] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Potri.014G141500.3 pacid=42763970 polypeptide=Potri.014G141500.3.p locus=Potri.014G141500 ID=Potri.014G141500.3.v4.1 annot-version=v4.1 ATGGATAGCGAGGCAGTGAGACGGAGAATGAACATGATTGTTGCCCATTTTGCACCCACCATTTCCGATGATATATCCTCCCCTGCTCACCTCCTCCCTT TGAACTGCAGTGGCAGTTTGAATTCTGTCATCCGAAGGTGCGATAATAGAATGTATTTTGCACGTCAGGGGTCAGCTTCTCAAGCTTGCTTCATGAGAAT TCAACAGCAGGGTAGCTCACTTGTGTTTCTAAAATCTAACTGTGCATGCCAGCAGGGTAGCTCCGAAAAGGGTCTCCAATCCTCTGCTTCTTCTGAAACA GAATGGTCTTGTAATGCTGAACTTATAAAAGATGAAGCACCATTGTTTTCCAGACCTACCAAGATGAAGCCGAACTTGCCAAACGTTGAACCAACCCTAA CTCCTGCTAAATATTGCCAATCAACCATGTCTGCCCTTCCCAAGTTTGCCAGGCCAAATAGACGCACAATAAACAGGAACGGGCAGCTTCAGTTTGAGAA GAAAATATATTCTTCTGAATCTAATGGAATTGAGAGGTCACCAAAGATGGATGTTGTAGAATCTGGAGTTAATTATGTCTTGAAATTAGAGATTCCAGGT GTTAACGTCAGTGACATTAGAGTGGAGATTCATGGCCAAAACTTGAAAGTATCGGGCAAAGGCTCTACTCAGTGCTGTAAAATGGCATCTGGGGGTTGCT CAAGTGACTCCATCTTAAGATATCACAAGAGGGAGATTGTAGAAGGGCCATACGAGATTGTGTGGCAACTTCCCCTCGATGGGAACAAGGACTCTGTCTC AGCTGAGTTTCTTAACGGATTATTGCAAGTAACTGTTCCAAAAATGTGA
AA sequence Show only first row Show all	>Potri.014G141500.3 pacid=42763970 polypeptide=Potri.014G141500.3.p locus=Potri.014G141500 ID=Potri.014G141500.3.v4.1 annot-version=v4.1 MDSEAVRRRMNMIVAHFAPTISDDISSPAHLLPLNCSGSLNSVIRRCDNRMYFARQGSASQACFMRIQQQGSSLVFLKSNCACQQGSSEKGLQSSASSET EWSCNAELIKDEAPLFSRPTKMKPNLPNVEPTLTPAKYCQSTMSALPKFARPNRRTINRNGQLQFEKKIYSSESNGIERSPKMDVVESGVNYVLKLEIPG VNVSDIRVEIHGQNLKVSGKGSTQCCKMASGGCSSDSILRYHKREIVEGPYEIVWQLPLDGNKDSVSAEFLNGLLQVTVPKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Potri.014G141500 [exp]	0	1	Pt-ACD32.1
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Potri.011G025200 [exp]	1.73	0.9632
AT1G30260		AGL79	unknown protein		Potri.011G081001 [exp]	3.16	0.9628
					Potri.017G079000 [exp]	3.46	0.9556
AT5G05280			RING/U-box superfamily protein...		Potri.019G130100 [exp]	5.47	0.9627
AT1G74640			alpha/beta-Hydrolases superfam...		Potri.017G115100 [exp]	5.65	0.9504
AT5G63520			unknown protein		Potri.011G010100 [exp]	8.48	0.9230
AT2G42750			DNAJ heat shock N-terminal dom...		Potri.014G143400 [exp]	14.00	0.9551
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014301 [exp]	20.24	0.9308
AT3G20230			Ribosomal L18p/L5e family prot...		Potri.019G081000 [exp]	20.71	0.9262
AT4G25040			Uncharacterised protein family...		Potri.012G104300 [exp]	20.73	0.9020

Compare expression of checked genes

Potri.014G141500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.