Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ARPC1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30910 621 / 0 ARPC1B, ARPC1, ARPC1A actin-related protein C1A (.1.2.3) AT2G31300 613 / 0 ARPC1b actin-related protein C1B (.1) AT4G11920 45 / 4e-05 FZR1, CCS52A2 FIZZY-RELATED 1, cell cycle switch protein 52 A2 (.1) AT4G22910 45 / 5e-05 CCS52A1, FZR2 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) AT5G67320 45 / 9e-05 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT2G30050 44 / 0.0001 transducin family protein / WD-40 repeat family protein (.1) AT4G02730 44 / 0.0001 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G26060 43 / 0.0002 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G13840 43 / 0.0002 FZR3 FIZZY-related 3 (.1.2) AT2G01330 42 / 0.0007 nucleotide binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041200 [exp] 49 / 3e-06 AT3G18060 1000 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.010G202100 [exp] 49 / 4e-06 AT5G13840 707 / 0.0 FIZZY-related 3 (.1.2) Potri.002G051900 [exp] 48 / 5e-06 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G057500 [exp] 48 / 8e-06 AT5G13840 705 / 0.0 FIZZY-related 3 (.1.2) Potri.006G045800 [exp] 47 / 1e-05 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.009G115300 [exp] 46 / 2e-05 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.012G049200 [exp] 45 / 6e-05 AT3G18060 1018 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.001G112700 [exp] 45 / 8e-05 AT4G22910 705 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.003G119500 [exp] 45 / 8e-05 AT4G22910 702 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031375 [exp] 609 / 0 AT2G30910 579 / 0.0 actin-related protein C1A (.1.2.3) Lus10038960 [exp] 53 / 2e-07 AT3G18060 971 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10027252 [exp] 53 / 3e-07 AT3G18060 979 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10021059 [exp] 49 / 3e-06 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 46 / 3e-05 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10024482 [exp] 45 / 9e-05 AT4G22910 733 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Lus10026337 [exp] 44 / 0.0002 AT4G34460 570 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10001192 [exp] 44 / 0.0002 AT4G22910 734 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Lus10042325 [exp] 44 / 0.0002 AT4G34460 598 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10021365 [exp] 43 / 0.0002 AT2G26060 482 / 2e-172 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] Beta_propeller PF07676 [poplar] [flax] PD40 WD40-like Beta Propeller Repeat
Representative CDS sequence Show only first row Show all	>Potri.014G141700.1 pacid=42764435 polypeptide=Potri.014G141700.1.p locus=Potri.014G141700 ID=Potri.014G141700.1.v4.1 annot-version=v4.1 ATGGCAGCCGTTGAAGTTCATCAGTTCGCTCAGTGCATCACTTGCCACGCTTGGAGCGCGGATCGATCTATGATTGCATTTTGTCCAAACAACAATGAAG TTCACATATATAGATTGTCCCAAGACAAGTGGGAGAAGGTCCATGTTCTTCAAAAGCATGACCAGATTGTTTGTGGGATAGATTGGAGTGCGAGATCAAA CAGAATTGTTACTGCATCTCATGATCGAAATTCATATGTCTGGAACCAAGAAGGATCAGAATGGGTACCGACCCTTGTTATACTCAGGCTAAACCGCGCT GCACTTTGTGTGCAGTGGAGTCCAAAAGAGAACAAGTTCGCTGTTGGAAGTGGGGCTAAAACTGTTTGTATATGCTACTATGAGCAAGACAACAACTGGT GGGTCAGTAAACTTATCAGGAAAAGACATGATTCCTCGGTGACAAGTGTTGCCTGGCATCCTAATAATATTCTTCTTGCGACAACATCTACAGATGGAAA ATGTCGAGTGTTTTCCACTTTTATTAAAGGTGTTGATACAAGGGATTCCAAAGCAGGCTCTGTCTCAGATTCAAAATTTGGAGAGCAAATTGTTCAGCTT GATCTCTCGTTTTCCTGGGCATTTGGTGTGAAGTGGTCGCCTAGTGGCAATACCTTGGCTTACGTAGGACATAATTCCATGATTTATTTTGTTGATGATG TTGGTCCATCTCCATTGGCCCAGAATGTTGCATTTCGCGATTTACCTCTCCGTGATGTCTTATTTGTTTCTGAGAAAATGGTCATAGGAGTGGGATTCGA CTGCAACCCTATGGTTTTTGCAGCAGATGAAAGAGGAATATGGAGCTTTATCAGGTTCCTTGGTGAAAGAAAATCAACACTTTCAGGTTCAAGATACAGT TCACAGTTTTCTGAAGCATTTGGAAAATTTTATGGCCAATCGAAGTATGGAGCGAGCAATGATGGCATTGAACCTTCAAGGTCACGTGGAGGCATTCACG AGAATTGCATAAGTTGTATTATGTCTCTTACAGAATCAGGGAGTTCTAGAAAAACACGCTTCAGCACTTCAGGATTGGATGGTAAAGTAGTTGTTTGGGA TTTGGAGAACCAGGAAGATCTATCTGGATATCTGTAA
AA sequence Show only first row Show all	>Potri.014G141700.1 pacid=42764435 polypeptide=Potri.014G141700.1.p locus=Potri.014G141700 ID=Potri.014G141700.1.v4.1 annot-version=v4.1 MAAVEVHQFAQCITCHAWSADRSMIAFCPNNNEVHIYRLSQDKWEKVHVLQKHDQIVCGIDWSARSNRIVTASHDRNSYVWNQEGSEWVPTLVILRLNRA ALCVQWSPKENKFAVGSGAKTVCICYYEQDNNWWVSKLIRKRHDSSVTSVAWHPNNILLATTSTDGKCRVFSTFIKGVDTRDSKAGSVSDSKFGEQIVQL DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADERGIWSFIRFLGERKSTLSGSRYS SQFSEAFGKFYGQSKYGASNDGIEPSRSRGGIHENCISCIMSLTESGSSRKTRFSTSGLDGKVVVWDLENQEDLSGYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Potri.014G141700 [exp]	0	1	Pt-ARPC1.1
AT4G25600			Oxoglutarate/iron-dependent ox...		Potri.012G142800 [exp]	1.00	0.9434
AT5G26667		PYR6	P-loop containing nucleoside t...		Potri.002G134600 [exp]	1.41	0.9428
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.013G006250 [exp]	2.00	0.9306
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Potri.001G185300 [exp]	2.23	0.9296
AT2G28310			Protein of unknown function (D...		Potri.009G011000 [exp]	3.00	0.9344
AT4G34660			SH3 domain-containing protein ...		Potri.004G161300 [exp]	3.16	0.9156
AT5G21070			unknown protein		Potri.009G158800 [exp]	4.24	0.9274
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Potri.002G135500 [exp]	6.32	0.8833	Pt-RAB6.1
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.009G047300 [exp]	6.92	0.9209
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.014G075700 [exp]	9.00	0.9193

Compare expression of checked genes

Potri.014G141700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.