Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42810 895 / 0 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT5G59160 229 / 1e-70 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT3G46820 226 / 2e-69 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT5G27840 223 / 2e-68 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT2G29400 222 / 8e-68 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT5G43380 221 / 3e-67 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT3G05580 218 / 2e-66 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G39840 217 / 5e-66 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT4G11240 217 / 6e-66 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT1G64040 212 / 5e-64 TOPP3 type one serine/threonine protein phosphatase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G142700 [exp] 223 / 2e-68 AT2G39840 493 / 1e-177 type one serine/threonine protein phosphatase 4 (.1) Potri.008G060800 [exp] 221 / 2e-67 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.009G037700 [exp] 220 / 5e-67 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.006G113100 [exp] 220 / 5e-67 AT2G39840 488 / 4e-175 type one serine/threonine protein phosphatase 4 (.1) Potri.001G245700 [exp] 218 / 2e-66 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.010G197600 [exp] 218 / 4e-66 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.013G014700 [exp] 218 / 7e-66 AT3G05580 563 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.005G024100 [exp] 216 / 1e-65 AT5G27840 553 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Potri.013G045900 [exp] 216 / 2e-65 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031381 [exp] 627 / 0 AT2G42810 699 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Lus10016489 [exp] 224 / 2e-68 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10011827 [exp] 224 / 5e-68 AT2G39840 513 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004692 [exp] 219 / 6e-67 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004989 [exp] 219 / 7e-67 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10020659 [exp] 224 / 2e-66 AT3G05580 562 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10042559 [exp] 219 / 2e-66 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10040259 [exp] 218 / 2e-66 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10029882 [exp] 218 / 4e-66 AT3G05580 555 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10031489 [exp] 218 / 6e-66 AT3G05580 565 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.014G141800.6 pacid=42762657 polypeptide=Potri.014G141800.6.p locus=Potri.014G141800 ID=Potri.014G141800.6.v4.1 annot-version=v4.1 ATGCCAAATATGGAAACTCAAAATTCTAACGTTTCACGAGCTGAAGAAATCAAAGTCTTGGCCAATGAAGCATTTAAAGCCCACAAATATGGACAGGCTA TTGATCTGTACTCGCAAGCTATCGAACTAAATGGTGACAATGCAGTTTACTGGGCTAATCGTGCATTCGCCCACTCTAAACTCGAGGAATATGGCAGTGC GATACAGGATGCTTCGAAAGCCACTGAAATTGATCCTAAATACTCAAAGGGTTATTACAGGCGAGGTGCTGCTTATCTTGCCATGGGCAAATTCAAAGAT GCTCTGAAGGACTTCCAACAAGTGAAAAAAATCTGCCCAAATGATCCTGATGCTTCAAAGAAATTAAAGGAATGTGAGAAGGCAGTAATGAAGCTTAAGT TTGAAGAAGCAATTGCTGTTCCCGAGTCTCAGAGGCGCTCAGTAGCTGATTCTATTGATTTTCATTCGATAGGGACTAGCCCCAGTTCATCATCCGTGCC CACCCAAGTGGCCATGGCACCAGTAGCAGTAGCAGTTGTGGCAGCAGCTGTGATGTTGGTGGGAACGGCAAAACCTGTTGTGGTGGTAGCAGTGCTAATG GTGGTACTGGTGGTCCTAGGGGCATATTTGTGGGGTAGCTGCAGGGGTAGTGGTGTTTTTACCAAGAGAGGAATAATGGATTTAGATGTGGAGCCACAAT ACTCTGGTGCAAGGATAGAGGGAGATATTGTCACGTTGGATTTTGTCAAGAAAATGATGGATGACTTCAAGAATCAAAAGTGCTTACACAAACGATATGC ATTCCAGATGGTTTTACAAACAAGAGAAATTCTGCAAGCTCTGCCTTCTTTGGTTGATATAAATGTTCCCGAGGGCAAGCATTTCACTGTTTGTGGTGAT GTACATGGTCAGTTCTATGATCTGTTAAACATTTTTGAGCTGAATGGGTTTCCCTCGGAAGAGAATCCATATCTGTTTAATGGTGACTTTGTGGATAGGG GATCATTTTCCTTGGAAGTCATCCTCACATTGTTTGCTTTCAAGTGCATGTGTCCATCAGCTATATATCTTTCTAGAGGAAATCATGAAAGCAAGAGCAT GAACAAGATATATGGTTTTGAGGGTGAGGTCAGATCCAAGTTGAGCGAGACATTTGTCGAACTCTTTGCAGAAGTCTTCTGTTGTTTACCTTTGGCTCAT GTAATAAATGGGAAGGTGTTTGTGGTACATGGAGGTCTTTTTAGTGTTGATGGGGTGAAACTGTCTGACATTAAAGCCATCGATCGGTTTTGCGAACCTC CAGAGGAAGGATTGATGTGTGAATTGCTATGGAGTGATCCACAGCCATTCCCTGGAAGAGGTCCTAGCAAGCGTGGTGTAGGGCTTTCTTTTGGCAAAGA TGTGACACGGAGATTTTTGCAGGACAATAACCTAGATTTAGTTGTGCGATCTCATGAAGTAAAGGATGAAGGATATGAGATCGAGCATGATGGTAAATTG ATCACTGTATTTTCTGCTCCAAATTATTGTGATCAGATGGGTAACAAGGGTGCTTTTATTCGATTTGAAGCCCCTGATTTGAAGCCAAATATTGTTACAT TCTCAGCAGTGCCTCACCCTAATGTCAAGCCTATGGCATATGCAAACAACTTCCTGCGAATGTTCTCATAA
AA sequence Show only first row Show all	>Potri.014G141800.6 pacid=42762657 polypeptide=Potri.014G141800.6.p locus=Potri.014G141800 ID=Potri.014G141800.6.v4.1 annot-version=v4.1 MPNMETQNSNVSRAEEIKVLANEAFKAHKYGQAIDLYSQAIELNGDNAVYWANRAFAHSKLEEYGSAIQDASKATEIDPKYSKGYYRRGAAYLAMGKFKD ALKDFQQVKKICPNDPDASKKLKECEKAVMKLKFEEAIAVPESQRRSVADSIDFHSIGTSPSSSSVPTQVAMAPVAVAVVAAAVMLVGTAKPVVVVAVLM VVLVVLGAYLWGSCRGSGVFTKRGIMDLDVEPQYSGARIEGDIVTLDFVKKMMDDFKNQKCLHKRYAFQMVLQTREILQALPSLVDINVPEGKHFTVCGD VHGQFYDLLNIFELNGFPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH VINGKVFVVHGGLFSVDGVKLSDIKAIDRFCEPPEEGLMCELLWSDPQPFPGRGPSKRGVGLSFGKDVTRRFLQDNNLDLVVRSHEVKDEGYEIEHDGKL ITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVPHPNVKPMAYANNFLRMFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42810		AtPP5, PP5.2, P...	Arabidopsis thaliana protein p...		Potri.014G141800 [exp]	0	1
AT1G06200			Peptidase S24/S26A/S26B/S26C f...		Potri.002G037900 [exp]	14.14	0.7623
AT5G21060			Glyceraldehyde-3-phosphate deh...		Potri.004G196200 [exp]	17.14	0.7648
AT5G62300			Ribosomal protein S10p/S20e fa...		Potri.015G129800 [exp]	17.23	0.7905	RPS20.2
					Potri.011G126600 [exp]	42.70	0.7383
AT2G26590		RPN13	regulatory particle non-ATPase...		Potri.006G078800 [exp]	64.24	0.6966
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.002G202800 [exp]	73.00	0.7375	RPL18.9
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Potri.015G130000 [exp]	75.92	0.7386	RPS13.4
AT1G73320			S-adenosyl-L-methionine-depend...		Potri.017G153900 [exp]	75.99	0.7334
AT3G55490			GINS complex protein (.1)		Potri.008G068100 [exp]	83.13	0.7031	TTN10.1
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.006G014900 [exp]	97.57	0.7147

Compare expression of checked genes

Potri.014G141800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.