Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58750 866 / 0 CSY2 citrate synthase 2 (.1) AT2G42790 854 / 0 CSY3 citrate synthase 3 (.1) AT3G58740 731 / 0 CSY1 citrate synthase 1 (.1) AT2G44350 110 / 8e-26 CSY4, ATCS CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2) AT3G60100 108 / 3e-25 CSY5 citrate synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G089300 [exp] 919 / 0 AT3G58750 855 / 0.0 citrate synthase 2 (.1) Potri.001G230500 [exp] 107 / 1e-24 AT2G44350 792 / 0.0 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010945 [exp] 856 / 0 AT2G42790 855 / 0.0 citrate synthase 3 (.1) Lus10031384 [exp] 796 / 0 AT3G58750 796 / 0.0 citrate synthase 2 (.1) Lus10019688 [exp] 109 / 1e-25 AT2G44350 784 / 0.0 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2) Lus10031385 [exp] 94 / 1e-22 AT3G58750 88 / 4e-21 citrate synthase 2 (.1) Lus10006943 [exp] 50 / 2e-06 AT2G44350 428 / 2e-148 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00285 [poplar] [flax] Citrate_synt Citrate synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G141900.1 pacid=42763585 polypeptide=Potri.014G141900.1.p locus=Potri.014G141900 ID=Potri.014G141900.1.v4.1 annot-version=v4.1 ATGTCAAAATCAGACTCTTCCCCGGAAACAGCTCGCAGCCGCTTGGCCGTGCTCACCGCTCATTTAGTTGGAGCAACGACACTCGAGTCATCTTCGTCGT CGATTAACCGGTCTTGCGTGTCTGCGCAGGTCTCTCCTCCTGGAAACCTCCGGGGCGCTTTGACGGTGATCGATGAGAGGACTGGTAAGAAATACCAAAT TCCGGTCTCTCAAGACGGCACCGTCAAAGCCTCTGATTTCAAGAAGATCTCGACAGGAAAGAATGACAAGGGGCTGAAGCTGTACGATCCAGGATATCTG AATACGGCACCTGTTCGATCGTCGATTTCGTATATAGATGGTGATGAGGGTATCCTTAGATACAGAGGCTACCCTATTGAGGAATTGGCTGAGAGCAGTA CCTTTGTGGAAGTGGCCTACCTCGTTATGTATGGGAGTTTGCCGTCTCAAAGTCAGTTAGCAGACTGGGAATTTGCTATTTTGCAACATTCAGCTCTACC TCAGGGTGTTTTGGATATTATACAGGCGATGCCTCATGATGCACACCCAATGGGTGTGCTAGTCAGTGCAATGAGCGCTCTTTCCATCTATCATCCTGAT GCTAATCCAGCTCTCAGAGGGCAAGATCTTTACAAGTCAAAACAAGTGAGAGACAAACAGATTGCACGCATTCTTGGAAAGGCGCCAACCATTGCAGCCG CAGCTTATTTGAGGTTGGCTGGCAGGCCTCCAGTTATACCTTCTAGCAACCTTTCTTATTCAGAGAACTTCCTGTACATGCTAGATTCATTGGGTGACCG GTCTTATAAACCTAATCCTCGACTGGCTCGAGTACTAGATGTACTTTTCATACTGCATGCAGAACATGAGATGAATTGCTCCACTTCTGCTGCCCGACAT CTTGCATCCAGTGGTGTCGATGTATACACTGCTCTTGCGGGGGCTGTTGGAGCATTGTATGGTCCTCTTCATGGTGGAGCAAATGAGGCTGTGCTTAAGA TGCTAAGTGAGATTGGAACCGTTGAAAACATTCCAAGTTTCCTTGAGGGCGTGAAGAACAGGAAGCGAAAGATGTCAGGTTTTGGACATCGTGTGTATAA AAACTATGATCCTAGAGCAAAGGTCATTAAGAAACTGGCAGAGGAGGTGTTTTCCATTGTTGGCCGGGATCCTCTTATTGAGGTAGCAGTTGCCTTGGAA AAGGCTGCACTAGATGATGAATATTTTGTTAAGAGGAAGCTCTATCCAAATGTTGATTTCTACTCTGGGTTAATATATAGGGCAATGGGATTTCCGACGG AGTTTTTCCCCGTCCTATTTGCAATCCCTCGAATGGCTGGCTATTTAGCCCACTGGCGAGAGTCACTGGATGATCCTGATACAAAGATAATGAGACCACA ACAGGTATACACCGGGGAATGGCTGCGGCATTATATGCCACTGAAAGAACGGGAGGCATCAAGCAATGCAGATAAGCCTGGTCAAATTTCCGTTTCAAAT GCCTCCATGCGACGGCGTGCTGGATCTCGGGTCTAG
AA sequence Show only first row Show all	>Potri.014G141900.1 pacid=42763585 polypeptide=Potri.014G141900.1.p locus=Potri.014G141900 ID=Potri.014G141900.1.v4.1 annot-version=v4.1 MSKSDSSPETARSRLAVLTAHLVGATTLESSSSSINRSCVSAQVSPPGNLRGALTVIDERTGKKYQIPVSQDGTVKASDFKKISTGKNDKGLKLYDPGYL NTAPVRSSISYIDGDEGILRYRGYPIEELAESSTFVEVAYLVMYGSLPSQSQLADWEFAILQHSALPQGVLDIIQAMPHDAHPMGVLVSAMSALSIYHPD ANPALRGQDLYKSKQVRDKQIARILGKAPTIAAAAYLRLAGRPPVIPSSNLSYSENFLYMLDSLGDRSYKPNPRLARVLDVLFILHAEHEMNCSTSAARH LASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLSEIGTVENIPSFLEGVKNRKRKMSGFGHRVYKNYDPRAKVIKKLAEEVFSIVGRDPLIEVAVALE KAALDDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGEWLRHYMPLKEREASSNADKPGQISVSN ASMRRRAGSRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58750		CSY2	citrate synthase 2 (.1)		Potri.014G141900 [exp]	0	1
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Potri.013G023200 [exp]	2.00	0.9462
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Potri.018G013900 [exp]	12.24	0.8884
AT3G27150			Galactose oxidase/kelch repeat...		Potri.001G331500 [exp]	14.89	0.9015
AT4G16600			Nucleotide-diphospho-sugar tra...		Potri.003G076800 [exp]	18.16	0.8916
AT4G15093			catalytic LigB subunit of arom...		Potri.004G135300 [exp]	22.91	0.8588
AT4G26910			Dihydrolipoamide succinyltrans...		Potri.001G357000 [exp]	26.03	0.8572
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.010G245200 [exp]	30.98	0.8785
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003800 [exp]	37.78	0.8908
AT4G17350			Plant protein of unknown funct...		Potri.001G156700 [exp]	39.34	0.8737
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Potri.011G031700 [exp]	39.39	0.8895	ANR/BAN2,Pt-BAN.1

Compare expression of checked genes

Potri.014G141900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.