Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58790 664 / 0 GAUT15 galacturonosyltransferase 15 (.1) AT5G15470 411 / 9e-139 GAUT14 galacturonosyltransferase 14 (.1) AT3G01040 411 / 1e-138 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G54690 401 / 1e-134 IRX8, GAUT12, LGT6 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) AT5G47780 303 / 1e-95 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 303 / 7e-95 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT3G25140 293 / 1e-92 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT4G38270 287 / 8e-89 GAUT3 galacturonosyltransferase 3 (.1.2) AT2G20810 278 / 1e-86 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT1G18580 274 / 2e-85 GAUT11 galacturonosyltransferase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G124500 [exp] 459 / 3e-157 AT5G15470 873 / 0.0 galacturonosyltransferase 14 (.1) Potri.017G090800 [exp] 458 / 4e-157 AT5G15470 882 / 0.0 galacturonosyltransferase 14 (.1) Potri.001G416800 [exp] 417 / 4e-141 AT5G54690 851 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.011G132600 [exp] 405 / 2e-136 AT5G54690 871 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.016G001700 [exp] 319 / 3e-101 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 306 / 6e-97 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.004G206000 [exp] 296 / 4e-92 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.002G246500 [exp] 292 / 5e-92 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.014G073800 [exp] 291 / 2e-90 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032990 [exp] 422 / 7e-143 AT3G01040 955 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10013189 [exp] 417 / 1e-140 AT5G15470 952 / 0.0 galacturonosyltransferase 14 (.1) Lus10015379 [exp] 415 / 4e-136 AT3G01040 833 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10030703 [exp] 395 / 3e-132 AT3G01040 926 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10035836 [exp] 391 / 9e-131 AT5G54690 887 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10038739 [exp] 322 / 2e-102 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10036619 [exp] 301 / 9e-98 AT5G54690 636 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10041389 [exp] 301 / 1e-94 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 302 / 1e-93 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 293 / 3e-91 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.014G142000.1 pacid=42762322 polypeptide=Potri.014G142000.1.p locus=Potri.014G142000 ID=Potri.014G142000.1.v4.1 annot-version=v4.1 ATGAAGTTTTACATTTCCACCACCGGGATCAAGAGAGTCACCATCAGCACCACCAACTCTTCTGCCAAGGGATCCACGGTGGCAACTCGTCGGATTACTC GCCGGACGTTTTTGCCGGTGGTGCTGTTGCTTTCGATTGTTTTGCCCTTTCTTTTTGTTAGAATTGCGTTTTTGGTTCTTGAATCTGCCTCTGCCTGCAA TTCTGCTCTCGACTGCATAGGATGGGGGCTACTCGGCGGGAGCGAAGCATCTTTGCTAAGGGAAGAACTGACAAGAGCTTTAATGGAGGCAAAGGAGGGC CATGGCACTAATGATGGTGATTATAGAAGAGAGGGCTCAACAGAATCATTCAATGTGCTTGTCAACGAAATGACTTCGAACCAGCAAGACATAAAGACCT TTGCTTTCAGGACCAAGGCCATGCTATCAATGATGGAGCTCAAGGTTCAGTCTGCTAGAGAGCAAGAATCAATAAACTGGCATTTAGCTTCACATGGTGT TCCAAAGAGCCTGCATTGCCTTTGCCTTAAACTAGCTGAAGAATATGCTGTAAATGCCATGGCTCGATCTCATTTACCTCCCCCTGAATATGTTTCTCGC CTCACTGATCCATCCTTCCACCATGTTGTTCTTCTAACTGATAATGTTCTTGCTGCCTCCGTTGTCATCTCTTCCACAGTCCAACACTCAGCCAACCCTG AAAAGTTGGTTTTCCATATAGTCACTGACAAAAAAACTTACATTCCGATGAATGCATGGTTTGCAATCAATCCTATTAAATCAGCAGCTGTGGAAGTTAA GGGGTTGCACCAATATGATTGGTCTCATGAGGTGAATGTCCATGTCAAAGAGATGTTAGAGATTCATCGCTTAATTTGGAGCCATTACAATGACAATTTG AGAAATGCCAACTTTCAACATGAGGGAGTAAACAGAAGAAGTTTGGAGGCTTTAACCCCTAGCTGCCTCTCCCTTTTGAATCATCTCAGAATTTATATCC CTGAGCTGTTTCCAGATCTCAACAAGATAGTATTCTTAGACGAAGATGTTGTGGTACAACATGACATGTCATCTTTGTGGGAATTGGATCTCAACAAGAA AGTTGTCGGCGCAGTTGTTGATTCATGGTGTGGAGACAACTGCTGCCCAGGAAAAAAATACAAGGATTACTTGAACTTCTCTTACCCAATAATTTCATCC AATTTTGACCATGATCGTTGTGTTTGGCTCTATGGTGTGAATGTCTTTGATCTTGAAGCTTGGAGGAGGGTCAAAATCACTACAAATTATCATAAATGGT TGAAACATAACCTCAATTTTGGGATGGAGTTATGGCAACCAGGAGTGCATCCACCAGCCTTGCTTGCTTTCGAGGGTCAGGTACATCCAATTGATCCTTC ATGGCATGTCGGTGGACTAGGTTATAGACCCCCACAAGCTCACAATATTAAGATGTTAGGTGATGCCGCGGTTTTACATTTTAGTGGCCCGGCAAAGCCA TGGCTTGATATTGGGTTCCCTGAGCTACGAAGTTTATGGAATAGACATGTAAATTTTTCAGACAAGTTTATTAGGAAATGCAGAATTCTGGGATGA
AA sequence Show only first row Show all	>Potri.014G142000.1 pacid=42762322 polypeptide=Potri.014G142000.1.p locus=Potri.014G142000 ID=Potri.014G142000.1.v4.1 annot-version=v4.1 MKFYISTTGIKRVTISTTNSSAKGSTVATRRITRRTFLPVVLLLSIVLPFLFVRIAFLVLESASACNSALDCIGWGLLGGSEASLLREELTRALMEAKEG HGTNDGDYRREGSTESFNVLVNEMTSNQQDIKTFAFRTKAMLSMMELKVQSAREQESINWHLASHGVPKSLHCLCLKLAEEYAVNAMARSHLPPPEYVSR LTDPSFHHVVLLTDNVLAASVVISSTVQHSANPEKLVFHIVTDKKTYIPMNAWFAINPIKSAAVEVKGLHQYDWSHEVNVHVKEMLEIHRLIWSHYNDNL RNANFQHEGVNRRSLEALTPSCLSLLNHLRIYIPELFPDLNKIVFLDEDVVVQHDMSSLWELDLNKKVVGAVVDSWCGDNCCPGKKYKDYLNFSYPIISS NFDHDRCVWLYGVNVFDLEAWRRVKITTNYHKWLKHNLNFGMELWQPGVHPPALLAFEGQVHPIDPSWHVGGLGYRPPQAHNIKMLGDAAVLHFSGPAKP WLDIGFPELRSLWNRHVNFSDKFIRKCRILG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58790		GAUT15	galacturonosyltransferase 15 (...		Potri.014G142000 [exp]	0	1
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Potri.003G074400 [exp]	4.00	0.6554
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.012G094600 [exp]	7.93	0.6652
AT3G20720			unknown protein		Potri.001G417200 [exp]	8.66	0.6926
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.006G115700 [exp]	9.89	0.6712
AT1G15780			unknown protein		Potri.003G014156 [exp]	15.49	0.6542
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.012G143200 [exp]	20.97	0.6148
AT1G19490	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.006G114600 [exp]	21.97	0.6395
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.012G001100 [exp]	27.34	0.5724
AT2G45670			calcineurin B subunit-related ...		Potri.014G074300 [exp]	30.85	0.6228
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Potri.007G055100 [exp]	37.68	0.5923

Compare expression of checked genes

Potri.014G142000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.