Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MAX2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42620 854 / 0 PPS, PP2, ORE9, MAX2 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) AT4G15475 54 / 4e-07 F-box/RNI-like superfamily protein (.1) AT4G07400 44 / 0.0004 VFB3 VIER F-box proteine 3 (.1) AT3G58530 43 / 0.0005 RNI-like superfamily protein (.1) AT2G25490 43 / 0.0006 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 43 / 0.001 EBF2 EIN3-binding F box protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G066700 [exp] 820 / 0 AT2G42620 717 / 0.0 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Potri.006G081600 [exp] 56 / 9e-08 AT4G07400 286 / 3e-89 VIER F-box proteine 3 (.1) Potri.014G023500 [exp] 49 / 1e-05 AT1G47056 636 / 0.0 VIER F-box proteine 1 (.1) Potri.006G195800 [exp] 46 / 5e-05 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.006G068500 [exp] 46 / 9e-05 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 45 / 0.0002 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G105400 [exp] 43 / 0.0007 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029834 [exp] 926 / 0 AT2G42620 843 / 0.0 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Lus10020707 [exp] 922 / 0 AT2G42620 845 / 0.0 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Lus10002715 [exp] 87 / 3e-20 AT2G42620 85 / 2e-20 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Lus10040230 [exp] 84 / 3e-19 AT2G42620 84 / 4e-20 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Lus10012764 [exp] 68 / 2e-11 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10013444 [exp] 50 / 4e-06 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10012294 [exp] 50 / 4e-06 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1) Lus10040998 [exp] 49 / 1e-05 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10034013 [exp] 48 / 2e-05 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10015980 [exp] 46 / 9e-05 AT3G58530 442 / 4e-156 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G142600.1 pacid=42762649 polypeptide=Potri.014G142600.1.p locus=Potri.014G142600 ID=Potri.014G142600.1.v4.1 annot-version=v4.1 ATGGCCAGTTCCAGTATGGCTATGGCTGCTACCATGAACGATCTGCCGGATGTGATTTTGTCAATCATTTTTTCATCGGTCTCTGACACACGAACCCGAA ACTCACTCTCCCTGGTTAACAGGAAATTTCTAGCTCTAGAGAGATCCACCCGCACCTCCCTCACTCTCCGTGGCAAAGCGCGTGATATCTACATGATCCC TACCTGTTTCAGATCGGTGACGCACCTCGACCTCTCTCTGCTCTCTCCTTGGGGCCGTTCTGATCTCCTATCCACCGCCTCCTCTGTACCTTTTCTCCTC GCCCAACGCCTTCGTCTGGCCTTCCCTCTAGTCACCTCCCTCACCGTTTATGCTCGATCTCCCTCCACTCTTCACATCCTCCTCCCTCAGTGGCCTAATC TGAGCCATGTCAAGCTCATCCGTTGGCATCCACGCTCCTCGTCCCCTCACCTTGGAAATGATGTAGTCCCTCTGTTTGAGCACTGCCAGGCGCTTAGTAG CATCGACCTTTCCAGTTTTTATTACTGGACTGAGGATATCCCTCCTGTTTTGCAAGCCTATCCCTCTGTGTCCAAGGCCTTGACATGCTTGGATCTCTTA ACTGTTTCTTTGACTGATGGTTTTAAGTCTGAGGAGATTCAGGCAATCACTGCAGCTTGTCCTAGTCTAACCAGGTTCCTTCTTGTTTGTATTTTCGATC CAAGTTACTTTGGATGTGTTGGTGACGAGACCTTGCTAGCGATTGTTGCTAACTGTCCAAGATTAAGGGTTTTGCATCTTGTTGATAGGGCTTCCTTGGG GAGCACTAGAGGGGAACCTGAAGATGATGGGTACACAAGGGAGGATGCAAGGATCACTAAAGTGGGGCTGGTGGACTTCTTTACTGGCCTTCCTCTTTTA CAAGAGTTGGTTCTAGATTTTTACCAGAATGTAAGGGATAGTGCTTTGGCTTTGGAAGCGCTTCATTCGAAGTGTCCTGAGTTGAAGCTGCTTAAATTGG GGCAGTTTCATGGGATCTGTATGGCCATTGAGTCCCAGCTTGATGGGGTTGCCTTGTGTTCGGGCCTGGTGTCCTTGACCATAAAGAATTCGGCAGATTT GACGGACATGGGGTTGATTGAGATTGGTAGAGGATGCTGTAATTTGGCGAGGTTTGAAGTCGAGGGATGCAAGAAGATTACAATGAAGGGAATGAGGACA ATGGCTTCATTGCTCCATAAGACTCTGATTGAGGTCAAAATATCTTGTTGCAAGAACCTTAATGCGGTAGCGTCTCTGCGATCTCTTGAGCCTATTCAGG GTCGAATTGAAAGGCTACACTTTGATTGTGTCTGGGAAGGTTTGGAAGAGGATGGCGGTATCCTCTGTTTTGACCTCAACGAAGGCCTTTGTCAAAGTGT CGAGCACGAGTATGGCAGCAAAAGGAAGAAGAGCAAGTATTCTTCGGATCCTGATTCTTCATCCTCCTGTATGCAAAGCAATGGAAATGGAATGTTTAGC AAGTCTTGGGACAGGCTCAAGTACCTTTCTCTATGGATTGGTGCCGGTGTGCTTTTGACTCCATTACCAATGGCTGGCCTGTATGATTGTCCTAATTTGG AGGAAATCAGGATAAAGGTCGAGGGAGACTGCAGAACTGGGCACAAACCATCACAGCGTGAATTTGGATTAAGCTGCCTTGCTTATTATCCTCGACTGTC AAAGATGCAGTTGGATTGTAGTGATACAATAGGTTTTGCATTAACTGCGCCATCTGGGCAAATGGATTTGAGCCTGTGGGAGAGGTTTTTCTTGAATGGG ATCGGGAATTTAAGCATATATGAGCTTGATTATTGGCCACCACAAGATCGGGACGTAAATCAAAGGAGCCTGTCACTCCCAGGAGCAGGGTTGCTTGCAG AATGTCTTGCAATGAGGAAGCTTTTCATACATGGAACAGCTCATGAGCATTTCATCATGTTCCTCCTAAGAATCCCCAATCTGAGAGATGTGCAGCTGAG GGAAGACTATTATCCAGCACCAGATAATGACACGTGCACTGAGATGAGAGTTGGTTCATGCAGTCGTTTTGAAGATGCATTGAACAGGCGTCAGATCCTC GACTGA
AA sequence Show only first row Show all	>Potri.014G142600.1 pacid=42762649 polypeptide=Potri.014G142600.1.p locus=Potri.014G142600 ID=Potri.014G142600.1.v4.1 annot-version=v4.1 MASSSMAMAATMNDLPDVILSIIFSSVSDTRTRNSLSLVNRKFLALERSTRTSLTLRGKARDIYMIPTCFRSVTHLDLSLLSPWGRSDLLSTASSVPFLL AQRLRLAFPLVTSLTVYARSPSTLHILLPQWPNLSHVKLIRWHPRSSSPHLGNDVVPLFEHCQALSSIDLSSFYYWTEDIPPVLQAYPSVSKALTCLDLL TVSLTDGFKSEEIQAITAACPSLTRFLLVCIFDPSYFGCVGDETLLAIVANCPRLRVLHLVDRASLGSTRGEPEDDGYTREDARITKVGLVDFFTGLPLL QELVLDFYQNVRDSALALEALHSKCPELKLLKLGQFHGICMAIESQLDGVALCSGLVSLTIKNSADLTDMGLIEIGRGCCNLARFEVEGCKKITMKGMRT MASLLHKTLIEVKISCCKNLNAVASLRSLEPIQGRIERLHFDCVWEGLEEDGGILCFDLNEGLCQSVEHEYGSKRKKSKYSSDPDSSSSCMQSNGNGMFS KSWDRLKYLSLWIGAGVLLTPLPMAGLYDCPNLEEIRIKVEGDCRTGHKPSQREFGLSCLAYYPRLSKMQLDCSDTIGFALTAPSGQMDLSLWERFFLNG IGNLSIYELDYWPPQDRDVNQRSLSLPGAGLLAECLAMRKLFIHGTAHEHFIMFLLRIPNLRDVQLREDYYPAPDNDTCTEMRVGSCSRFEDALNRRQIL D

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Potri.014G142600 [exp]	0	1	MAX2.2
AT4G06634	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.003G010400 [exp]	4.47	0.7713
AT3G48195			Phox (PX) domain-containing pr...		Potri.012G082500 [exp]	7.21	0.7497
AT4G19190			zinc knuckle (CCHC-type) famil...		Potri.004G236300 [exp]	8.36	0.7309
AT4G02210			unknown protein		Potri.002G200600 [exp]	9.48	0.7452
AT5G25280			serine-rich protein-related (....		Potri.006G060800 [exp]	11.66	0.7393
AT2G02148			unknown protein		Potri.008G143700 [exp]	20.04	0.7353
AT1G67340			HCP-like superfamily protein w...		Potri.001G056800 [exp]	24.65	0.7017
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Potri.006G153100 [exp]	30.00	0.7362
AT5G05230			RING/U-box superfamily protein...		Potri.019G058300 [exp]	33.94	0.7198
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Potri.018G129700 [exp]	34.32	0.6937

Compare expression of checked genes

Potri.014G142600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.