Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30990 252 / 1e-74 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) AT1G29240 101 / 4e-22 Protein of unknown function (DUF688) (.1) AT2G34170 59 / 6e-09 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2) AT4G18630 52 / 2e-06 Protein of unknown function (DUF688) (.1) AT5G45850 48 / 2e-05 Protein of unknown function (DUF688) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G057800 [exp] 212 / 7e-59 AT1G29240 206 / 1e-57 Protein of unknown function (DUF688) (.1) Potri.011G067000 [exp] 185 / 2e-49 AT1G29240 156 / 2e-40 Protein of unknown function (DUF688) (.1) Potri.016G123700 [exp] 56 / 4e-08 AT3G51760 87 / 7e-20 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3), Protein of unknown function (DUF688) (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033602 [exp] 205 / 6e-57 AT2G30990 169 / 5e-45 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10017644 [exp] 174 / 6e-46 AT2G30990 160 / 9e-42 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10029830 [exp] 142 / 6e-36 AT2G30990 139 / 2e-35 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10029223 [exp] 124 / 2e-29 AT1G29240 168 / 5e-45 Protein of unknown function (DUF688) (.1) Lus10007276 [exp] 117 / 2e-27 AT1G29240 167 / 5e-45 Protein of unknown function (DUF688) (.1) Lus10020709 [exp] 108 / 8e-25 AT2G30990 130 / 1e-32 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10015280 [exp] 80 / 3e-15 AT5G45850 170 / 2e-45 Protein of unknown function (DUF688) (.1) Lus10025403 [exp] 78 / 1e-14 AT4G18630 167 / 9e-45 Protein of unknown function (DUF688) (.1) Lus10022661 [exp] 49 / 1e-05 AT3G51760 79 / 6e-17 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3), Protein of unknown function (DUF688) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [poplar] [flax] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Potri.014G142800.6 pacid=42762729 polypeptide=Potri.014G142800.6.p locus=Potri.014G142800 ID=Potri.014G142800.6.v4.1 annot-version=v4.1 ATGTTAGTGAAAAATCTGATGGAAAAAAAGCAATTGGATTTTAATCAGCCGCTTCTATCAGTGAGGAGGTTCTCCTCAACAGCATCCACCAAAGAAGCCA AGATCAAAAGGAAAACTGATGATGCTCTATCCAGAATATCTCCTCCACCTGTTTACAAATCAGAATTGAAATCAGGTCCACTGAGGAACCCTGGAACTGT TCCTTTTGTATGGGAGCGAAGTCCAGGAAGACCCAAGGATGAAAGCAAACCACAAAATCGGGCTCTTCAACGGCCCCCTATTGCCCCAAAGCTTCCGCCT GGCAGGATTTTGAAAGATCAACAGCAAGCTTCAGTTAAAGGTTCTGAAGGCGCTAAACTAGCTGATCGTTCCCAAACAAGAAACGGCCATTCCAGTTTTC AAAATGAAACTAAAGAAGAAATTTCCAAGGAGGCAATAAAGGATGCGTCGAGTTCTGGTTCAGAAAGTGGAGAAGAAGCTTATGCAGATGCACTTGATAT CCTGTCACGAAGTGAATCGTTCTTCTTGAACTGCAGTATAAGTGGCGTGAGTGGCTTGGATGGTCCGGATTTGAAACCTTCTGGGGCTTTCTTTACAGAT CAGCATGGTCAAGATTTCATGATGGCTCGTTTCTTGCCTGCAGCAAAGGCAATGGCTTCAGAGACTCCTCAATGTTTTACTAGGAAGCAACCCGTCGTGC GAGAGCTACCGAGACAAATAGCCAAGGCAACAGGTGTGGAAAGGCATCCTCTAAATCGATATAGTCCAAACAATATACCAAATTATGCTCAAGCAGATGC AGTGGAAGATAGTGAAGATGAGGATTGTGATGATGACAGACCCGATGATCCATCACTTAAACTTTGTGGGTTGTTGCCTCAGCTATGCTCACAGAATTCA CTTTGCTTTATGAATCCTGTACTAGGGATGAGAAAGCAGGTCCCGGTACCCATTTCTTCAGTCTGTACAACGAAGTCTGGGTCTTCAAATGCTGCTTCTC GTAATGTCACTGCACATGAGCATCAGAGGAATGCCATGTATGAGAAGAGAGAATCCATCAAAATTGCTTGCAAAACTGAGAACAAAAGGCTGGATGAATC ATCTGCGTGCAAGGGTTGGCATAGTAAAGTGGCATCACCCACTGACAGTCAATTTCCTCAACCAGTCCATGAAGAACGAAGATGCACTGAGATTCCTGAT AAATGTAGGAATTCTGCGGCAAGTGACTTTATTCAATGTGCAAAAGGCAGCACAATTTTTCGAGAATTATTGGCCACTGAGAGCAGAGAATGGGAATCAG TCTCTGCAGTTTCCGTGGCTGAGAAAACTCTGTACATAGATTCTATGCATATGGTAAAACCTCAAAATTCTAATTCAAGTTCGTCTGATGCTAGAGGCTT ATCTGAATGCTCAAAGGATGACGTGGAGATACTTGTAAAGAATAGAGAAATTGAAGAAACTGATGATGTGAATTCTTCACTCCTGGATTCCAAGCACTTG AGTACTGTGGATGAGAAGAAAAAATTGCGACCTGATAGTTTGGAGTCTGTAGATTCCTGTTTTCTATCGTTATCTGACAAATCCATTCATGATGTGCACA TGGCTGTGATGGATGGTTCCCGACAGGATGAAGACAACATGCAAGTTTCTAACACATTGACCAGCCCGAAAGTGGACAAAGATGGGAAGATTGACTTAGA AAGCCGATCGGATAAAAAATTAGGTAACCTCGAAAGTTCTCATGTCTTTATTCAGGATTCAAATGGAGTAGTGGCTGGTAATGGCAGGATTGATTTAGAA AGCCAGCAGTGTAGAAAGTTAAGCAATAAAGAGAGTTCTATTGGCTGCTATACACAACTACTTCTTCCCCCACCTTTGCCAAAATCTCCGTCAGAGTCTT GGCTAAAGCGTACTCTACCTATTGTTTCCTCAAGGAATTCGTCCTCAAGGTCCCCTCTTGGTATGCATTTACATTCTAGAGTCCAAGCTTCCAAAACACT CTCCGATGACCCGAAGTGGGAAACAATTGTCAGGACCGCTAATATACAGCATGGGCATTTGCGCTTTTCCGAGGATTTGCTTGCACCAATACCGGAAACT TAG
AA sequence Show only first row Show all	>Potri.014G142800.6 pacid=42762729 polypeptide=Potri.014G142800.6.p locus=Potri.014G142800 ID=Potri.014G142800.6.v4.1 annot-version=v4.1 MLVKNLMEKKQLDFNQPLLSVRRFSSTASTKEAKIKRKTDDALSRISPPPVYKSELKSGPLRNPGTVPFVWERSPGRPKDESKPQNRALQRPPIAPKLPP GRILKDQQQASVKGSEGAKLADRSQTRNGHSSFQNETKEEISKEAIKDASSSGSESGEEAYADALDILSRSESFFLNCSISGVSGLDGPDLKPSGAFFTD QHGQDFMMARFLPAAKAMASETPQCFTRKQPVVRELPRQIAKATGVERHPLNRYSPNNIPNYAQADAVEDSEDEDCDDDRPDDPSLKLCGLLPQLCSQNS LCFMNPVLGMRKQVPVPISSVCTTKSGSSNAASRNVTAHEHQRNAMYEKRESIKIACKTENKRLDESSACKGWHSKVASPTDSQFPQPVHEERRCTEIPD KCRNSAASDFIQCAKGSTIFRELLATESREWESVSAVSVAEKTLYIDSMHMVKPQNSNSSSSDARGLSECSKDDVEILVKNREIEETDDVNSSLLDSKHL STVDEKKKLRPDSLESVDSCFLSLSDKSIHDVHMAVMDGSRQDEDNMQVSNTLTSPKVDKDGKIDLESRSDKKLGNLESSHVFIQDSNGVVAGNGRIDLE SQQCRKLSNKESSIGCYTQLLLPPPLPKSPSESWLKRTLPIVSSRNSSSRSPLGMHLHSRVQASKTLSDDPKWETIVRTANIQHGHLRFSEDLLAPIPET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30990			Protein of unknown function (D...		Potri.014G142800 [exp]	0	1
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.005G208600 [exp]	1.41	0.9184
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.013G114600 [exp]	1.73	0.9066
AT1G75210			HAD-superfamily hydrolase, sub...		Potri.014G196700 [exp]	2.00	0.9064
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.003G219900 [exp]	2.23	0.9030
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Potri.010G094300 [exp]	2.64	0.8940	KUP6.2
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.002G090700 [exp]	2.82	0.8935	TGA3.1
AT1G68940			Armadillo/beta-catenin-like re...		Potri.003G201000 [exp]	3.74	0.9078
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Potri.006G213900 [exp]	7.74	0.8830
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Potri.009G080200 [exp]	8.54	0.8422
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048132 [exp]	9.53	0.8856

Compare expression of checked genes

Potri.014G142800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.