Plant FIBer expression Database

Potri.014G142900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42700 990 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017646
[exp]
1038 / 0 AT2G42700 1003 / 0.0 unknown protein
Lus10033604
[exp]
779 / 0 AT2G42700 702 / 0.0 unknown protein
Lus10033605
[exp]
226 / 4e-69 AT2G42700 214 / 1e-65 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00995 Sec1 Sec1 family
Representative CDS sequence
>Potri.014G142900.1 pacid=42762263 polypeptide=Potri.014G142900.1.p locus=Potri.014G142900 ID=Potri.014G142900.1.v4.1 annot-version=v4.1
ATGGCTGTGGTCGATGTAATCAAATCATGCCTTGATTCCATTGCCCAAATATCAGAGCATGTTGAGGGTGCCATTCTTTATCTCGATTCTGGATGCACGG
AAAGTTTCCAATTCGCCGGAGCATTTCCTGTGCTACTCGAACTTGGAGTGAGAGCTATTTGCAGCCTGGAAAACATGTGTTCGCTTGATTCGGTGGTTAA
TTGGAACTCAAATTCCGATCCTGCATTGAAAATTGTGGTTATGACATCTCGTCTACTAAGCGATGCACATCGATATATTCTACGTTGCCTGAGTACACAT
AAAGGTGTTCATCAATGTACAGTATTTACATCTATCTCTGAGCTAGCCCAATCAGCGTACCCTGATTCACCTCTGGGACCAGATGCATTCCATGAGTACG
AAATCTTGCTTCTTCAAGATTATGAGGAGATTGTGAAGAAGAGTCAGAAAAAAGCTTCGCACCCAGAGGCTAGCAACTTCCAGGAAAGTTTAACCTTTGA
AGATGAAGGATGGTCACGGCTCACATCCAGTGAAGAGGATGTCTCTCACTCTGAAGCTACTTCAAGTGGGAAATATTTTTTTGGAGACAGCCATACAGAA
TATTTAGGGAAAAAATTGGTCGTTTCGGTGCATCACTTTCCCATGATTTTGTGTCCCTTTTCTCCTAAAGTCTTTGTGTTGCCTTCAGAGGGTTCAGTTT
CTGAAGCATACTTGTCAGCCAAACATGATGATTCTCTGAGCCCTGGATTACCTCCCATAAGTACTGGAGCGCCTCCTGATGGTGACGATGTTCCTCCTGG
GGCCCTTCTTACAGCGCATTTTCTTTACCATCTGGCTGCTAAGATGGACCTGAAAATGGAAATATTTTCCCTTGGTGATTTATCAAAGACTGTTGGGAAG
ATTATGACAGACATGTCAAGTCTTTATGATGTGGGGCGCCGTAAACGTTCTGCTGGGCTGTTACTCATTGATCGCACACTTGATCTCCTTACTCCATGCT
GCCATGGGGATTCACTTGTTGATTGTATGTTTTCATCTTTGCCTCGAAGAGAAAGAACAACATCCTATTCCTCCGTGAAAGGCTCAAAAACCCAACTCAA
ACTTGTTCCTTCTAGCCTACAACGTGCACCTCTTGATGTTCAGATACCACTTGGAAAAATATTACAAGAAGAAAAATCCGATACAAATGATTCTCAGCTT
GCAGAAAGAATTGAAGCTTTTCTAGGTGGGTGGGATGCCTGCAATTCTTCTCCTGAAACTGTGGACTTAGTAAATCTCTGCAATAAAGTTCATGATGGGA
AGTCTTTTCTCTCTGAGATTCAGCTGCTCAATGGATCCTTTGTTTCCAATGAAACATTTCGTGGAACACCATATATGGAAGCTATTTTGGACAGAAGAAC
AAAAGATGGAGCATTGCTGGTAAAGAAGTGGCTTCAGGAAACCCTACGTCGGCAAAATATCACTGTTAATGTAAAAATTCGTCCTGGTTTTGCTACAAAA
TCAGAGTTGCAACCTATGATCAGAGCACTAGCAAAAAGCCAGTCATCATTAATCAGAAATAAAGGAATAGTTCAGTTAGGAGCAGCTGTACTTGTGGCGC
TTGACGAATTACATAGTACCAGATGGAATGCATTTGCCAGTGCTGAGAAAATATTGAGTGCCACTGCAGGAGATACAAGCCAGAGTCTTGGCGCTCAAAT
TGGTGATCTTATCCATAAGAGTACTATGCTGGGATCAGATGGAGACAAGAAAACAGAGCATTTGCAAGGGTTACTTTCTTTTAAAGATGCTTTGCTCCTT
ATGACAGTGGGATATATATTAGCTGGTGAGAATTTCCCTACGTCTGGGTCTGGTGGCCCATTTTCTTGGAAAGAGGAGCATTTTCTAAAGGAAGCTATTG
TGGATGCGATTCTAAAAAATGCACCAGTGGTGAAACTTAAGTTTCTCGATGGTCTAACAGAAGAGCTTGAGGCTAACTTAAACAGAAAAAAGTCTGAAGA
CACAATAGAAGCATCTTCTGATCAGTTAGAATTTGATGATGATCAATGGGGCAAATGGGGTGATGAAGAAGAAGATGATGATAAGAATGATAAAAAACAG
GCATATAGTGACATGCAGCTGAAGCTGGAGTTGCTTGACAGGGTGGACAACCTTTTCAAATCTCTTCACAAGTTATCTACTGTGAAGAGGAATGTATCAC
TGCGAGAAGGGACATTTTCTTCGGAAAGTAACTTCACTGGTGATTCTGACTCAAATAAGAGTTTAATCTATAAGCTTCTGACCAGAGTGTTGGGAAAGTA
TGATGTACCCGGCTTGGAGTACCATTCCACTACCGTGGGGCGACTTTTTAAAAGTGGATTTGGAAGATTTGGTCTTGGACAGACAAAACCAAGTCTGGCC
GACCAAAATATCATTATGGTTTTTGTAGTTGGGGGCATCAACGCGGCTGAGGTGCGTGAAGTCCAAGAGGCATTATCTGAGAGTGGAAGACCTGATGTAG
AATTGATTCTTGGTGGAACAACATTCTTAACTCCTGACGACATGCTCACCTTACTAATGGGGGACTCTAGCTACATGTGA
AA sequence
>Potri.014G142900.1 pacid=42762263 polypeptide=Potri.014G142900.1.p locus=Potri.014G142900 ID=Potri.014G142900.1.v4.1 annot-version=v4.1
MAVVDVIKSCLDSIAQISEHVEGAILYLDSGCTESFQFAGAFPVLLELGVRAICSLENMCSLDSVVNWNSNSDPALKIVVMTSRLLSDAHRYILRCLSTH
KGVHQCTVFTSISELAQSAYPDSPLGPDAFHEYEILLLQDYEEIVKKSQKKASHPEASNFQESLTFEDEGWSRLTSSEEDVSHSEATSSGKYFFGDSHTE
YLGKKLVVSVHHFPMILCPFSPKVFVLPSEGSVSEAYLSAKHDDSLSPGLPPISTGAPPDGDDVPPGALLTAHFLYHLAAKMDLKMEIFSLGDLSKTVGK
IMTDMSSLYDVGRRKRSAGLLLIDRTLDLLTPCCHGDSLVDCMFSSLPRRERTTSYSSVKGSKTQLKLVPSSLQRAPLDVQIPLGKILQEEKSDTNDSQL
AERIEAFLGGWDACNSSPETVDLVNLCNKVHDGKSFLSEIQLLNGSFVSNETFRGTPYMEAILDRRTKDGALLVKKWLQETLRRQNITVNVKIRPGFATK
SELQPMIRALAKSQSSLIRNKGIVQLGAAVLVALDELHSTRWNAFASAEKILSATAGDTSQSLGAQIGDLIHKSTMLGSDGDKKTEHLQGLLSFKDALLL
MTVGYILAGENFPTSGSGGPFSWKEEHFLKEAIVDAILKNAPVVKLKFLDGLTEELEANLNRKKSEDTIEASSDQLEFDDDQWGKWGDEEEDDDKNDKKQ
AYSDMQLKLELLDRVDNLFKSLHKLSTVKRNVSLREGTFSSESNFTGDSDSNKSLIYKLLTRVLGKYDVPGLEYHSTTVGRLFKSGFGRFGLGQTKPSLA
DQNIIMVFVVGGINAAEVREVQEALSESGRPDVELILGGTTFLTPDDMLTLLMGDSSYM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G42700 unknown protein Potri.014G142900
[exp]
0 1
AT3G19020 Leucine-rich repeat (LRR) fami... Potri.009G108100
[exp]
1.41 0.7994
AT1G19480 DNA glycosylase superfamily pr... Potri.002G035300
[exp]
25.63 0.7433
AT3G51790 ATG1 transmembrane protein G1P-rela... Potri.003G205200
[exp]
52.39 0.6629
AT4G16420 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA... Potri.006G017300
[exp]
82.70 0.6749
AT1G19860 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.005G236300
[exp]
85.49 0.6114
AT1G05520 Sec23/Sec24 protein transport ... Potri.001G307400
[exp]
104.61 0.6110
AT5G49930 EMB1441 embryo defective 1441, zinc kn... Potri.008G101200
[exp]
139.73 0.6507
AT1G54215 proline-rich family protein (.... Potri.003G064900
[exp]
142.16 0.6407
AT5G13890 Family of unknown function (DU... Potri.002G237200
[exp]
146.04 0.5876
AT4G10500 2-oxoglutarate (2OG) and Fe(II... Potri.011G150300
[exp]
164.57 0.6169

Potri.014G142900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.