Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42710 367 / 3e-125 Ribosomal protein L1p/L10e family (.1) AT3G63490 150 / 1e-41 EMB3126 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262400 [exp] 153 / 9e-43 AT3G63490 427 / 2e-150 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) Potri.009G057100 [exp] 150 / 9e-42 AT3G63490 427 / 3e-150 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036988 [exp] 360 / 1e-122 AT2G42710 398 / 4e-137 Ribosomal protein L1p/L10e family (.1) Lus10040258 [exp] 240 / 2e-72 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10015809 [exp] 217 / 2e-69 AT2G42710 227 / 2e-73 Ribosomal protein L1p/L10e family (.1) Lus10005337 [exp] 142 / 2e-38 AT3G63490 476 / 2e-169 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) Lus10039589 [exp] 141 / 3e-38 AT3G63490 476 / 2e-169 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) Lus10004691 [exp] 130 / 2e-35 AT2G42710 147 / 5e-42 Ribosomal protein L1p/L10e family (.1) Lus10036985 [exp] 70 / 1e-12 AT2G44220 218 / 7e-65 Protein of Unknown Function (DUF239) (.1) Lus10015810 [exp] 57 / 4e-09 AT2G42710 94 / 1e-22 Ribosomal protein L1p/L10e family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00687 [poplar] [flax] Ribosomal_L1 Ribosomal protein L1p/L10e family
Representative CDS sequence Show only first row Show all	>Potri.014G143000.9 pacid=42762510 polypeptide=Potri.014G143000.9.p locus=Potri.014G143000 ID=Potri.014G143000.9.v4.1 annot-version=v4.1 ATGGCAGCAGCCATGAAAATCCTATTGTCCCAGCAGGGTAGCCGCAGGTGTTTGTGGTTGCCCAGCTCCTATTTCCGTAGATATTTTTGCTCTGAACCAA AACGACACCCAGATCCCTTAATAATCGAACCAGTCTCTTACCCAGTAAGATCTGAACATGAGAGCCAAGAAAATTCCCAAGAACAAGAACAACAGCAGCA ACAACCTCCCAGAAGAAGAAGTCAGCAAGAACAAGGTTGGAGTCGGGAGGACTTCCGTTACATGAAGGACGCTCCTCCATCCATTTCAATAACCCCAGTG TCATACGCACCACGGGTTGCGCCGCTGCCGGAGGACAGGGCTCAAGGACGGGACGCACACAATGTTGATATGGAGAGAGAGAGGATGAGGATTGAGGCGC GGAGGAATCTGGGGAGAAGAGCTTTTAAGGTTGTGGAAGAGGAGGGAAAAGTGGTGCTGCCTTTTCCTAGATTAATCAAGCCTGTTAAGAAGGAAAAGAA CCCTCTTTTTGACTTGAATGAGGCTATTAAGCAAGTCAAGGCTAATGCCAGGAATACTTTTGATGAGACTGTTGAAGCACATGTAAAATTGAGTATAGAT AAATCTCGATCTGACCTGATAGTTCGCGGCACCTTGGCTTTGCCTCACGGTGGTAAGAAGACTCTCAGGGTGGCTGTCTTTGCTGAAGGTGCAGATGCAG ATGAAGCAAGAGCCGCGGGAGCTGATATTGTTGGAGGTGTTGAACTTATTGATCAAATTGCAAAAGCTGGCAAGATTGACTTTGATCATTGTTTCACGAC TCCACAATTTTTCCCTCGCATTGCTAAGCTGGGGAAGATTCTTAATCGTCAAGGTTTGATGCCTGATCTTAAACAAGGTACTGTTGTCAGTGATGTTTCT AAAGCAGTAAAGAATGCAAAAAAGAATCAAATTAAGTTTAAAATGGACAAAACAGCAATTGTGCATGTGGGACTTGGAAAGGTGAGTTTTACAGAAGAGT CTTTGCGCGAGAATGTAGGTGCATTTATGAATGCTCTTCTGCAAGCAAAGCCTGCAGGCTTAAAGAAGACTTCCAAATATGCTGGATACGTCAACTCTTT CCATATTTGCAGCACTATGGGGCAGGGATTCCCTGTTTCAATACAGTCATTATCCAAAGCTGTAGATTACTACAGCAAAGTGCACCTGAAGTGA
AA sequence Show only first row Show all	>Potri.014G143000.9 pacid=42762510 polypeptide=Potri.014G143000.9.p locus=Potri.014G143000 ID=Potri.014G143000.9.v4.1 annot-version=v4.1 MAAAMKILLSQQGSRRCLWLPSSYFRRYFCSEPKRHPDPLIIEPVSYPVRSEHESQENSQEQEQQQQQPPRRRSQQEQGWSREDFRYMKDAPPSISITPV SYAPRVAPLPEDRAQGRDAHNVDMERERMRIEARRNLGRRAFKVVEEEGKVVLPFPRLIKPVKKEKNPLFDLNEAIKQVKANARNTFDETVEAHVKLSID KSRSDLIVRGTLALPHGGKKTLRVAVFAEGADADEARAAGADIVGGVELIDQIAKAGKIDFDHCFTTPQFFPRIAKLGKILNRQGLMPDLKQGTVVSDVS KAVKNAKKNQIKFKMDKTAIVHVGLGKVSFTEESLRENVGAFMNALLQAKPAGLKKTSKYAGYVNSFHICSTMGQGFPVSIQSLSKAVDYYSKVHLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42710			Ribosomal protein L1p/L10e fam...		Potri.014G143000 [exp]	0	1
AT5G11630			unknown protein		Potri.006G237800 [exp]	1.00	0.9324
AT3G21465			unknown protein		Potri.008G205300 [exp]	1.73	0.9154
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Potri.015G095700 [exp]	2.00	0.9231	Pt-RPL21.5
AT1G29880			glycyl-tRNA synthetase / glyci...		Potri.003G162300 [exp]	2.44	0.8815	GLYRS.2
AT5G64670			Ribosomal protein L18e/L15 sup...		Potri.001G324300 [exp]	2.82	0.9038
AT4G05400			copper ion binding (.1.2)		Potri.011G098000 [exp]	3.00	0.8672
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.006G039600 [exp]	4.47	0.8869
AT1G64880			Ribosomal protein S5 family pr...		Potri.013G076200 [exp]	5.09	0.8544
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Potri.007G039700 [exp]	5.47	0.8512
AT2G39795			Mitochondrial glycoprotein fam...		Potri.010G198600 [exp]	5.74	0.8601

Compare expression of checked genes

Potri.014G143000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.