Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58690 573 / 0 Protein kinase superfamily protein (.1) AT1G54820 378 / 1e-128 Protein kinase superfamily protein (.1) AT5G13160 325 / 3e-108 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT1G61860 323 / 6e-108 Protein kinase superfamily protein (.1) AT5G02800 318 / 4e-106 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G07070 318 / 5e-106 Protein kinase superfamily protein (.1) AT3G20530 317 / 1e-105 Protein kinase superfamily protein (.1) AT4G02010 325 / 8e-105 Protein kinase superfamily protein (.1) AT5G18610 319 / 9e-105 Protein kinase superfamily protein (.1.2) AT1G20650 311 / 9e-104 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G025700 [exp] 424 / 6e-147 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 402 / 3e-138 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 333 / 5e-112 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 331 / 3e-111 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 325 / 9e-108 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 323 / 1e-106 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 319 / 1e-106 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 321 / 2e-106 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 322 / 3e-106 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033606 [exp] 586 / 0 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1) Lus10017647 [exp] 580 / 0 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1) Lus10029948 [exp] 416 / 1e-142 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10004461 [exp] 408 / 8e-140 AT1G54820 465 / 4e-161 Protein kinase superfamily protein (.1) Lus10015756 [exp] 324 / 2e-107 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10036499 [exp] 320 / 2e-106 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 319 / 2e-106 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10011148 [exp] 317 / 1e-105 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10012814 [exp] 321 / 2e-105 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 320 / 2e-105 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.014G143100.1 pacid=42763399 polypeptide=Potri.014G143100.1.p locus=Potri.014G143100 ID=Potri.014G143100.1.v4.1 annot-version=v4.1 ATGGAAACAGAGAATGGTGAGTATGGAAGGCAAGAACGCATTGCTCTGGTGGCCATTGTGGTGGTGGCTTCACTGACAGTGGCTTCCCTGCTGGTTGCAT TTAGTTATTATTGCTATATACGTAACAAGCTCTCCAAACGCCTTAAAAACCACAGTAGGGAAGGGTATGAGGACAAAGGTTGCTTTACAGATCTCGAAGT TGTTGCCGGGAAAGGCCTTAACGTGTTCACATTTAAGCAATTGCATTCAGCTACTGGTGGTTTCAGCAAGTCGAATGTGGTTGGGCATGGTGGGTTTGGA TTAGTGTATCGTGGAGTCCTTAGCGATGGAAGGAAAGTTGCAATTAAGTTAATGGACCAAGCAGGGAAGCAGGGGGAAGATGAATTTAAAGTGGAGGTGG AATTGCTGAGCCACCTGCATTCTCCTTATCTGCTGGCATTGCTTGGGTATTGTTCAGGTGACAATCATAAAGTGCTGGTGTATGAGTTCATGCCAAATGG TGGTCTGCAAGAACATTTGCATCGTATCACTAGTTCCAATACTGTTTCCATAAGTTTGGACTGGGAAACACGTTTGAGAATTGCCCTCGAAGCTGCTAAG GGTTTGGAATATCTCCATGAGCATGTTAATCCTCCAGTGATTCATAGAGATTTTAAAAGCAGCAACATCCTCCTGGACAGAAATTTACACGCCAAAGTTT CTGATTTTGGATTGGCCAAGCTTGGACCTGACAAAGCTGGTGGACATGTTTCTACTAGAGTGCTGGGCACCCAGGGATATATCGCCCCTGAGTACGCATT AACTGGCCATTTGACAACAAAATCAGATGTCTACAGTTATGGGGTTGTTCTCTTGGAATTGCTTACTGGCAGAGTTCCAGTCGATATTAAGAGACCTGCT GGGGAAGGAGTTCTGGTATCTTGGGCACTGCCACGGTTGACAGATAGAGAGAAGGTTGTGGAAATTATGGATCCGGCATTGGAGGGCCAGTATTCAATGA AAGAGGTTATTCAGGTGGCAGCAATTGCTGCAATGTGTGTGCAACCAGAGGCAGATTACAGACCGTTGATGGCAGATGTTGTGCAGTCACTTGTACCACT GGTAAAAACGCAGCGGTCAACTTCAAAGGTAGGAAGCTGCTCGAATATCCATGCAGACCGGTGTCACACGCCGCAAGACTTGGTAGAGAAAACATGA
AA sequence Show only first row Show all	>Potri.014G143100.1 pacid=42763399 polypeptide=Potri.014G143100.1.p locus=Potri.014G143100 ID=Potri.014G143100.1.v4.1 annot-version=v4.1 METENGEYGRQERIALVAIVVVASLTVASLLVAFSYYCYIRNKLSKRLKNHSREGYEDKGCFTDLEVVAGKGLNVFTFKQLHSATGGFSKSNVVGHGGFG LVYRGVLSDGRKVAIKLMDQAGKQGEDEFKVEVELLSHLHSPYLLALLGYCSGDNHKVLVYEFMPNGGLQEHLHRITSSNTVSISLDWETRLRIALEAAK GLEYLHEHVNPPVIHRDFKSSNILLDRNLHAKVSDFGLAKLGPDKAGGHVSTRVLGTQGYIAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDIKRPA GEGVLVSWALPRLTDREKVVEIMDPALEGQYSMKEVIQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKTQRSTSKVGSCSNIHADRCHTPQDLVEKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58690			Protein kinase superfamily pro...		Potri.014G143100 [exp]	0	1
AT1G53380			Plant protein of unknown funct...		Potri.001G387700 [exp]	1.00	0.9355
AT3G62110			Pectin lyase-like superfamily ...		Potri.002G186900 [exp]	1.41	0.9181
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.014G177700 [exp]	1.73	0.9067
					Potri.018G101800 [exp]	2.00	0.9055
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.011G148000 [exp]	2.44	0.8844	ACT6
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162400 [exp]	2.64	0.8765
AT4G13600			Carbohydrate-binding X8 domain...		Potri.017G055700 [exp]	3.87	0.8845
AT1G29980			Protein of unknown function, D...		Potri.011G087500 [exp]	4.00	0.8709
AT2G34700			Pollen Ole e 1 allergen and ex...		Potri.011G053600 [exp]	6.24	0.8505
AT4G24630			DHHC-type zinc finger family p...		Potri.007G077000 [exp]	6.32	0.8561

Compare expression of checked genes

Potri.014G143100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.