Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PRX1.11
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 404 / 4e-142 Peroxidase superfamily protein (.1) AT5G58400 357 / 2e-123 Peroxidase superfamily protein (.1) AT5G58390 346 / 2e-119 Peroxidase superfamily protein (.1) AT4G36430 335 / 7e-115 Peroxidase superfamily protein (.1) AT5G66390 326 / 2e-111 Peroxidase superfamily protein (.1) AT2G18150 324 / 2e-110 Peroxidase superfamily protein (.1) AT1G44970 324 / 2e-110 Peroxidase superfamily protein (.1) AT1G14550 323 / 2e-110 Peroxidase superfamily protein (.1) AT2G18140 323 / 6e-110 Peroxidase superfamily protein (.1) AT3G50990 322 / 2e-109 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G083600 [exp] 415 / 2e-146 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 380 / 6e-133 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 379 / 2e-132 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 362 / 7e-125 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.016G132900 [exp] 357 / 1e-123 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 356 / 2e-123 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.013G156800 [exp] 355 / 5e-123 AT5G05340 345 / 7e-119 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 355 / 8e-123 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 355 / 8e-123 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032786 [exp] 475 / 2e-170 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10006534 [exp] 463 / 1e-165 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10003573 [exp] 461 / 5e-165 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10000346 [exp] 447 / 4e-158 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10034207 [exp] 394 / 2e-138 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10009936 [exp] 365 / 1e-126 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1) Lus10030145 [exp] 352 / 3e-121 AT5G05340 353 / 2e-121 Peroxidase superfamily protein (.1) Lus10009932 [exp] 353 / 4e-120 AT5G05340 419 / 6e-146 Peroxidase superfamily protein (.1) Lus10030148 [exp] 345 / 2e-119 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10030149 [exp] 347 / 6e-119 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.014G143200.2 pacid=42763150 polypeptide=Potri.014G143200.2.p locus=Potri.014G143200 ID=Potri.014G143200.2.v4.1 annot-version=v4.1 ATGGGCTCTACTAAATTCTTTGTTACACTCTGTGTTGTACCGCTCCTAGCATCCTCCTTTTGCAGCGCACAGCTTTCTGCCACCTTTTATGCTTCGACAT GCCCTAATCTTCAAACCATAGTGCGTAATGCAATGACGGGGGCTGTCAATGGCCAGCCTCGGCTTGCCGCCTCTATCCTCCGCTTGTTCTTCCACGACTG CTTTGTGAATGGATGCGACGGATCTATACTACTGGATGACACTGCCACTTTCACGGGTGAAAAGAATGCGAATCCCAACAGGAATTCAGCTAGAGGTTTT GAAGTGATTGACACCATTAAAACTCGGGTAGAAGCGGCTTGCAATGCCACAGTTTCCTGCGCAGATATCCTTGCACTTGCAGCCCGAGATGGAGTTGTAC TGCGAGGAGGACCATCATGGACAGTACCACTTGGCCGGAGAGATGCAAGAACAGCTAGCCAGAGTGCAGCCAACAGCCAAATCCCATCACCCGCGTCTAG CCTTGCGACCCTAATCTCCATGTTTTCTGCCAAAGGCTTGAGTGCTGGTGACATGACTGCGCTCTCTGGGGGTCACACAATTGGCTTTGCCAGATGCACC ACATTTCGTAACCGCATATACAATGACACCAACATTGATGCCAGCTTTGCCACTACTAGAAGGGCTAGTTGCCCTGCTTCTGGTGGTGACGCCACTTTGG CTCCACTCGATGGCACTCAAACCAGATTTGATAACAATTATTACACCAATCTTGTGGCCCGCCGTGGCTTGCTTCATTCAGACCAGGAGCTCTTCAACGG AGGTTCTCAAGATGCACTTGTCAGGACTTACAGCACAAACGGCGCTACCTTTGCTAGAGATTTTGCTGCTGCCATGGTGAAGATGGGGAATATCAGCCCC CTTACAGGGAGGAATGGAGAGATAAGAAGGAATTGCAGGGTGGTGAATTGA
AA sequence Show only first row Show all	>Potri.014G143200.2 pacid=42763150 polypeptide=Potri.014G143200.2.p locus=Potri.014G143200 ID=Potri.014G143200.2.v4.1 annot-version=v4.1 MGSTKFFVTLCVVPLLASSFCSAQLSATFYASTCPNLQTIVRNAMTGAVNGQPRLAASILRLFFHDCFVNGCDGSILLDDTATFTGEKNANPNRNSARGF EVIDTIKTRVEAACNATVSCADILALAARDGVVLRGGPSWTVPLGRRDARTASQSAANSQIPSPASSLATLISMFSAKGLSAGDMTALSGGHTIGFARCT TFRNRIYNDTNIDASFATTRRASCPASGGDATLAPLDGTQTRFDNNYYTNLVARRGLLHSDQELFNGGSQDALVRTYSTNGATFARDFAAAMVKMGNISP LTGRNGEIRRNCRVVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05340			Peroxidase superfamily protein...		Potri.014G143200 [exp]	0	1	Pt-PRX1.11
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076500 [exp]	2.64	0.9694
AT2G26695			Ran BP2/NZF zinc finger-like s...		Potri.018G066900 [exp]	3.46	0.9488
					Potri.005G193600 [exp]	4.69	0.9289
					Potri.001G073166 [exp]	6.92	0.9497
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G120700 [exp]	7.21	0.9226
AT3G02885		GASA5	GAST1 protein homolog 5 (.1)		Potri.017G124200 [exp]	8.00	0.9366	Pt-GASA5.2
					Potri.018G145526 [exp]	10.00	0.9324
AT5G52390			PAR1 protein (.1)		Potri.015G144800 [exp]	10.00	0.8931
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.002G173900 [exp]	10.67	0.8452
AT2G41810			Protein of unknown function, D...		Potri.006G050400 [exp]	10.81	0.9336

Compare expression of checked genes

Potri.014G143200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.