Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42750 416 / 2e-146 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G23240 110 / 8e-27 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G05345 56 / 6e-09 Chaperone DnaJ-domain superfamily protein (.1) AT1G21080 56 / 2e-08 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT1G77020 54 / 6e-08 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G76700 52 / 3e-07 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G39150 49 / 3e-06 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT2G21510 48 / 6e-06 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G36040 45 / 8e-06 J11 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) AT5G06910 45 / 2e-05 ATJ6, EMB1393 J-domain protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G072600 [exp] 108 / 2e-26 AT5G23240 461 / 4e-160 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G347600 [exp] 91 / 2e-20 AT5G23240 149 / 2e-41 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G074600 [exp] 55 / 3e-08 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G260400 [exp] 54 / 4e-08 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G000300 [exp] 54 / 6e-08 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.005G185800 [exp] 54 / 8e-08 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.004G158300 [exp] 51 / 4e-07 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.009G119800 [exp] 50 / 1e-06 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.013G021000 [exp] 47 / 6e-06 AT3G05345 288 / 1e-98 Chaperone DnaJ-domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020749 [exp] 434 / 1e-153 AT2G42750 455 / 1e-161 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10040990 [exp] 107 / 6e-26 AT5G23240 442 / 8e-153 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10022246 [exp] 92 / 6e-21 AT5G23240 139 / 2e-37 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008768 [exp] 87 / 1e-19 AT5G23240 141 / 6e-39 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10029916 [exp] 60 / 4e-10 AT3G05345 277 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1) Lus10004485 [exp] 60 / 4e-10 AT3G05345 287 / 2e-98 Chaperone DnaJ-domain superfamily protein (.1) Lus10017472 [exp] 51 / 6e-07 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10028809 [exp] 51 / 6e-07 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10042774 [exp] 50 / 1e-06 AT1G77020 497 / 1e-176 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10013198 [exp] 49 / 2e-06 AT1G21080 580 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0344 [poplar] [flax] 4Fe-4S PF13370 [poplar] [flax] Fer4_13 4Fe-4S single cluster domain of Ferredoxin I
Representative CDS sequence Show only first row Show all	>Potri.014G143400.1 pacid=42762390 polypeptide=Potri.014G143400.1.p locus=Potri.014G143400 ID=Potri.014G143400.1.v4.1 annot-version=v4.1 ATGGCCCAGTTAATATCTCCTGTATGCACAGATGCACTTAAGATTAAAAAACCATCTAACGTTTTCCATATTTCTTCAAGAGGAAAGACCGCCCTTTATC ATAATAATTCCCGGAGTGTTTTGAACTCTAAGAGAAGAGATTTTGGCAGAATCAGGGTTGCAGCCAACAGTTCAGCCTCTGCAGATGCTGTTGCCGATGA TTATTACGCGGTCTTAGGTCTCCTTCCAGATGCGACACCAGAGCAGATCAAGAAGGCTTATTATAGTTGCATGAAAGCATGTCATCCAGACTTGAGTGGC AATGACACAGATACCACAAATTTCTGCATGTTCATCAATGAGGTCTATGCGGTGCTTAGTGACCCTTTGCAGCGCATGATCTATGATGAAATTCATGGCT TCGCATTGACGGCGATGAATCCTTTCTTTGATGATTCCAGCCCAAAGGATCATGCCTTTGTTGATGAGTTTAGCTGCATCGGATGCAAAAATTGTGCCAA TGTGGCTCCTGAAGTATTTGGAATTGAGGAAGATTTTGGAAGAGCCAGAGTTTACAGTCAGTGTGGAAATCTTCAATTAGTCCAGCAAGCAATTGAAAGT TGCCCGGTTGATTGCATCCATTGGACTTCTGCGGCGCAGCTTTCTTTGCTTGAAGATGAAATGCGCAGAGTAGAAAGAATAAATGTTGCACTGATGCTTT CAGGAATGGGATCTGCAGGAGCAGATGTTTTCAGAATGGCATGTTCTCGATGGGAAAAGAGGCAAGCAAAAATCTTGGATCAGGCTAAAATAAGGATGAT GAAGCAAAAAGATGTTGATAAAAAGGGGTCTTACTGGAGCGATCTCTGGGGTAATCCAAAAGAAAACCAAAGTTCAGAGGAAGAAACCAAAGAGAGAGCA AGAAGAGCCGCAGCAGCAGCTCGAAGATGGAGGGAGTACTCAAGGAAGGGTGTTGATAAGCCTCCCGCTTATAAACTTCCGGAGGCAATCTCCAATAATG AGAAATGA
AA sequence Show only first row Show all	>Potri.014G143400.1 pacid=42762390 polypeptide=Potri.014G143400.1.p locus=Potri.014G143400 ID=Potri.014G143400.1.v4.1 annot-version=v4.1 MAQLISPVCTDALKIKKPSNVFHISSRGKTALYHNNSRSVLNSKRRDFGRIRVAANSSASADAVADDYYAVLGLLPDATPEQIKKAYYSCMKACHPDLSG NDTDTTNFCMFINEVYAVLSDPLQRMIYDEIHGFALTAMNPFFDDSSPKDHAFVDEFSCIGCKNCANVAPEVFGIEEDFGRARVYSQCGNLQLVQQAIES CPVDCIHWTSAAQLSLLEDEMRRVERINVALMLSGMGSAGADVFRMACSRWEKRQAKILDQAKIRMMKQKDVDKKGSYWSDLWGNPKENQSSEEETKERA RRAAAAARRWREYSRKGVDKPPAYKLPEAISNNEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42750			DNAJ heat shock N-terminal dom...		Potri.014G143400 [exp]	0	1
AT5G05200			Protein kinase superfamily pro...		Potri.019G061300 [exp]	1.00	0.9859
AT4G13670		PTAC5	plastid transcriptionally acti...		Potri.001G049900 [exp]	2.00	0.9841
AT3G28910	MYB	AtMYB30, MYB30	myb domain protein 30 (.1)		Potri.004G126700 [exp]	3.00	0.9631
AT3G62410		CP12-2	CP12 DOMAIN-CONTAINING PROTEIN...		Potri.014G120700 [exp]	3.46	0.9773
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.005G085400 [exp]	4.47	0.9731
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G096425 [exp]	7.41	0.9629
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Potri.012G091800 [exp]	8.12	0.9529
AT3G20230			Ribosomal L18p/L5e family prot...		Potri.019G081000 [exp]	9.38	0.9571
AT5G05280			RING/U-box superfamily protein...		Potri.019G130100 [exp]	9.48	0.9630
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014301 [exp]	10.24	0.9572

Compare expression of checked genes

Potri.014G143400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.